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2011

Banci L, Bertini I, Calderone V, Cefaro C, Ciofi-Baffoni S, Gallo A, Kallergi E, Lionaki E, Pozidis C, Tokatlidis K (2011) Molecular recognition and substrate mimicry drive the electron-transfer process between MIA40 and ALR. Proceedings of the National Academy of Sciences USA 108:4811-6
[Abstract]

Banci L, Bertini I, Ciofi-Baffoni, S., Boscaro, F, Chatzi, A, Mikolajczyk, M, Tokatlidis, K. Winkelmann, J. (2011) Anamorsin is a [2Fe-2S] cluster-containing substrate of the Mia40-dependent mitochondrial protein trapping machinery. Chemistry& Biology 18:794-804
[Abstract]

Blazadonakis ME, Zervakis M, Kafetzopoulos D. (2011) Complementary gene signature integration in multiplatform microarray experiments. IEEE Trans Inf Technol Biomed. 15:155-63
[Abstract]

Blazadonakis ME, Zervakis ME, Kafetzopoulos D. (2011) Integration of gene signatures using biological knowledge. Artif Intell Med. 53:57-71
[Abstract]

Boleti, H., Smirlis, D., Dalagiorgou, G., Meurs, E.F., Christoforidis, S., and  Mavromara, P., (2010). ER targeting and retention of the HCV NS4B protein relies on the concerted action of multiple structural features including its transmembrane domains. Mol. Membr. Biol. 27(1):45-62.
[Abstract]

Chen L, Balabanidou V, Remeta D.P, Minetti C.A.S.A, Portaliou A.G, Economou A, Kalodimos C.G. (2011) Structural instability tuning as a regulatory mechanism in protein-protein interactions. Molecular Cell 44: 734-44
[Abstract]

Clowney EJ, Magklara A, Colquitt BM, Pathak N, Lane RP, Lomvardas S. (2011) High-throughput mapping of the promoters of the mouse olfactory receptor genes reveals a new type of mammalian promoter and provides insight into olfactory receptor gene regulation. Genome Res. 21(8):1249-59
[Abstract]
 

Dalakouras A, Tzanopoulou M, Tsagris M, Wassenegger M, Kalantidis K. (2011) Hairpin transcription does not necessarily lead to efficient triggering of the RNAi pathway. Transgenic Res. 20:293-304
[Abstract]

Deligianni E, Morgan RN, Bertuccini L, Kooij TW, Laforge A, Nahar C, Poulakakis N, Schüler H, Louis C, Matuschewski K, Siden-Kiamos I. (2011) Critical role for a stage-specific actin in male exflagellation of the malaria parasite. Cell Microbiol. 13:1714-30
[Abstract]

Eliopoulos E, Zervou MI, Andreou A, Dimopoulou K, Cosmidis N, Voloudakis G, Mysirlaki H, Vazgiourakis V, Sidiropoulos P, Niewold TB, Boumpas DT, Goulielmos GN. (2011) Association of the PTPN22 R620W polymorphism with increased risk for SLE in the genetically homogeneous population of Crete. Lupus . 20:501-6
[Abstract]

Franek BS, Kariuki SN, Arrington J, Utset TO, Niewold TB, Mikolaitis RA, Jolly M, Zervou M, Boumpas DT, Goulielmos G. (2011) IRF8 Allele associated with susceptibility to multiple sclerosis is associated with serum interferon Alpha and serologic profile in systemic Lupus Erythematosus. Journal of Investigative Medicine 59:705-705
[Abstract]

Gessmann R, Kyvelidou C, Papadovasilaki M, Petratos K. (2011) The crystal structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis. Biopolymers 95:202-7
[Abstract]

Gomez-Gonzales J.F, Mel B.W, Poirazi P. (2011) Distinguishing linear vs. nonlinear integration in CA1 radial oblique dendrites: it's about time. Frontiers in Comp. Neurosc. 5:44
[Abstract]

Gossec L, Paternotte S, Aanerud GJ, Balanescu A, Boumpas DT, Carmona L, de Wit M, Dijkmans BA, Dougados M, Englbrecht M, Gogus F, Heiberg T, Hernandez C, Kirwan JR, Mola EM, Cerinic MM, Otsa K, Schett G, Scholte-Voshaar M, Sokka T, von Krause G, Wells GA, Kvien TK. (2011) Finalisation and validation of the rheumatoid arthritis impact of disease score, a patient-derived composite measure of impact of rheumatoid arthritis: a EULAR initiative. Ann Rheum Dis. 70:935-42
[Abstract]

Gregg SQ, Gutiérrez V, Robinson AR, Woodell T, Nakao A, Ross MA, Michalopoulos GK, Rigatti L, Rothermel CE, Kamileri I, Garinis G, Stolz DB, Niedernhofer LJ. (2011) A mouse model of accelerated liver aging due to a defect in DNA repair. Hepatology doi: 10.1002/hep.24713
[Abstract]

Helm JM, Dadami E, Kalantidis K. (2011) Local RNA silencing mediated by agroinfiltration. Methods Mol Biol. 744:97-108
[Abstract]

Kapellios, E. A., Karamanou, S., Sardis, M. F., Aivaliotis, M., Economou, A, Pergantis, S. A. (2011) Using Nanoelectrospray Ion Mobility Spectrometry (GEMMA) to Determine the Size and Relative Molecular Mass of Proteins and Protein Assemblies: A Comparison with MALLS and QELS. Analytical and Bioanalytical Chemistry 399:2421-33
[Abstract]

Karantzali E, Lekakis V, Ioannou M, Hadjimichael C, Papamatheakis J, Kretsovali A. (2011) Sall1 regulates embryonic stem cell differentiation in association with Nanog. J Biol Chem. 286:1037-45
[Abstract]

Knox PG, Davies CC, Ioannou M, Eliopoulos AG. (2011) The death domain kinase RIP1 links the immunoregulatory CD40 receptor to apoptotic signaling in carcinomas. J Cell Biol . 192:391-9
[Abstract]

Knox PG, Davies CC, Ioannou M, Eliopoulos AG (2011) The death kinase RIP1 links the immunoregulatory CD40 receptor to apoptotic signaling in carcinomas. J. Cell Biol. 192:391-9
[Abstract]

Kontarakis Z, Pavlopoulos A, Kiupakis A, Konstantinides N, Douris V, Averof M. (2011) A versatile strategy for gene trapping and trap conversion in emerging model organisms. Development 138:2625-30
[Abstract]

Kontarakis Z, Konstantinides N, Pavlopoulos A, Averof M. (2011) Reconfiguring gene traps for new tasks using iTRAC. Fly 5:352-355
[Abstract]

Kourtis N, Tavernarakis N. (2011) Cellular stress response pathways and ageing: intricate molecular relationships. EMBO Journal 30: 2520-31
[Abstract]

Krasagakis K, Fragiadaki I, Metaxari M, Kruger-Krasagakis S, Tzanakakis G.N, Stathopoulos E.N, Eberle J, Tavernarakis N, Tosca A.D. (2011) Kit receptor activation by autocrine and paracrine stem cell factor stimulates growth of merkel cell carcinoma in vitro. Journal of Cellular Physiology 226:1099-1109
[Abstract]

Krasagakis K., Metaxari M., Zervou M., Stathopoulos E. N., Eberle J., Kanitakis J., Georgoulias V., Krüger-Krasagakis S., Tavernarakis N. and Tosca A. D. (2011) Identification of the M541L sequence variation of the transmembrane Kit domain in Merkel cell carcinoma. Anticancer Research 31:807-11
[Abstract]

Lee SC, Magklara A, Smith CL. (2011) HDAC activity is required for efficient core promoter function at the mouse mammary tumor virus promoter. J Biomed Biotechnol. 2011;2011:416905
[Abstract]
 
Magklara A, Yen A, Colquitt BM, Clowney EJ, Allen W, Markenscoff-Papadimitriou E, Evans ZA, Kheradpour P, Mountoufaris G, Carey C, Barnea G, Kellis M, Lomvardas S. (2011) An epigenetic signature for monoallelic olfactory receptor expression. Cell. 13;145(4):555-70
[Abstract]
 
Marino G, Morselli E, Bennetzen M. V, Eisenberg T, Megalou E, Schroeder S, Cabrera S, Benit P, Rustin P, Criollo A, Kepp O, Galluzzi L, Shen S, Malik S. A, Maiuri M. C, Horio Y, Lopez-Otin C, Andersen J. S, Tavernarakis N, Madeo F, Kroemer G. (2011) Longevity-relevant regulation of autophagy at the level of the acetylproteome. Autophagy 7:647-9
[Abstract]

Markaki M, Tavernarakis N. (2011) The role of autophagy in genetic pathways influencing ageing. Biogerontology 12:377-86
[Abstract]

Mavroudi I, Papadaki V, Pyrovolaki K, Katonis P, Eliopoulos AG, Papadaki HA. (2011) The CD40/CD40 ligand interactions exert pleiotropic effects on bone marrow granulopoiesis. J Leukoc Biol. 89:771-83
[Abstract]

Menzel U, Kosteas T, Tolaini M, Killeen N, Roderick K, Kioussis D. (2011) Modulation of the murine CD8 gene complex following the targeted integration of human CD2-locus control region sequences. J Immunol. 187:3712-20
[Abstract]

Mitsakakis K, Gizeli E. (2011) Multi-sample acoustic biosensing microsystem for protein interaction analysis
Biosensors and Bioelectronics 26:4579-84
[Abstract]

Mitsakakis K, Gizeli E. (2011) Detection of multiple cardiac markers with an integrated acoustic platform for cardiovascular risk assessment. Analytical Chimica Acta 699:1-5
[Abstract]

Morselli E, Marino G, Bennetzen M, Eisenberg T, Megalou E, Schroeder S, Cabrera S, Benit P, Rustin P, Criollo A, Shen S, Kepp O, Maiuri C, Horio Y, Lopez-Otin C, Andersen J. S, Tavernarakis N, Madeo F, Kroemer G. (2011) Spermidine and resveratrol induce autophagy by distinct pathways converging on the acetylproteome. Journal of Cell Biology 192:615-29
[Abstract]

Mosialou I, Krasagakis L, Kardassis D. (2011) Opposite regulation of the human apolipoprotein M gene by hepatocyte nuclear factor 1 and Jun transcription factors. J. Biol. Chem. 286:17259-69
[Abstract]

Ntali S, Bertsias G, Boumpas DT. (2011) Cyclophosphamide and lupus nephritis: when, how, for how long? Clin Rev Allergy Immunol. 40:181-91
[Abstract]

Ohnsorg PM, Rohrer L, Perisa D, Kateifides A, Chroni A, Kardassis D, Zannis VI, von Eckardstein A. (2011) Carboxyl Terminus of Apolipoprotein A-I (ApoA-I) Is Necessary for the Transport of Lipid-free ApoA-I but Not Prelipidated ApoA-I Particles through Aortic Endothelial Cells. J Biol Chem. 286:7744-54
[Abstract]

Oulas A, Poirazi P. (2011) Utilization of SSCprofiler to predict a new miRNA gene. Methods in Molecular Biology 676:243-52
[Abstract]

Oulas A, Karathanasis N, Poirazi P. (2011) Computational Identification of miRNAs Involved in Cancer. Methods in Molecular Biology 676:23-41
[Abstract]

Oulas A, Karathanasis N, Louloupi A, Poirazi P. (2011) Finding cancer-associated miRNAs: methods and tools. Molecular Biotechnology 49:97-107
[Abstract]

Papanikolaou A, Papafotika Α, Christoforidis S. (2011) CD39 reveals novel insights into the role of transmembrane domains in protein processing, apical targeting and activity. Traffic 12(9):1148-1165
[Abstract]

Rieckher M., Meyer H., Ripoll J. and Tavernarakis N. (2011) Microscopic optical projection tomography in vivo. PLoS One 6:e18963
[Abstract]

Saitakis M, Gizeli E. (2011) Acoustic sensors as a biophysical tool for probing cell attachment and cell/surface interactions. Cellular and Molecular Life Sciences 69:357-71
[Abstract]

Saitakis M, Gizeli E. (2011) Quantification of the effect of glycocalyx condition on membrane receptor interactions using an acoustic wave sensor. European Biophysics Journal with Biophysics Letters 40:209-15
[Abstract]

Saridaki A, Sapountzis P, Harris HL, Batista PD, Biliske JA, Pavlikaki H, Oehler S, Savakis C, Braig HR, Bourtzis K. (2011) Wolbachia prophage DNA adenine methyltransferase genes in different Drosophila-Wolbachia associations. PLoS One 6:e19708
[Abstract]

Sarris PF, Gao S, Karademiris K, Jin H, Kalantidis K, Panopoulos NJ. (2011) Phytobacterial type III effectors HopX1, HopAB1 and HopF2 enhance sense-post-transcriptional gene silencing independently of plant R gene-effector recognition. Mol Plant Microbe Interact. 24:907-17
[Abstract]

Segers K, Klaassen H, Economou A, Chaltin P, Anné J. (2011) Development of a high-throughput screening assay for the discovery of small-molecule SecA inhibitors. Analytical Biochemistry 413:90-6
[Abstract]

Sflomos G, Kostaras E, Panopoulou E, Pappas N, Kyrkou A, Politou AS, Fotsis T, Murphy C. (2011) ERBIN is a new SARA-interacting protein: competition between SARA and SMAD2 and SMAD3 for binding to ERBIN. J Cell Sci 124:3209-3222
 
Siden-Kiamos I, Louis C, Matuschewski K. (2011) Evidence for filamentous actin in ookinetes of a malarial parasite. Mol. Biochem. Parasitol. 181:186-9

Siden-Kiamos I, Ganter M, Kunze A, Hliscs M, Steinbüchel M, Mendoza J, Sinden RE, Louis C, Matuschewski K. (2011) Stage-specific Depletion of Myosin A Supports an Essential Role in Motility of Malarial Ookinetes. Cell Microbiol. 13:1996-2006
[Abstract]

Stagakis E, Bertsias G, Verginis P, Nakou M, Hatziapostolou M, Kritikos H, Iliopoulos D, Boumpas DT. (2011) Identification of novel microRNA signatures linked to human lupus disease activity and pathogenesis: miR-21 regulates aberrant T cell responses through regulation of PDCD4 expression. Ann Rheum Dis. 70:1496-506
[Abstract]

Strohoffer, C., Förster, T., Chorvat, D., Kasak, P., Lacik, I., Koukaki, M., Karamanou, S., Economou,A. (2011) Quantitative analysis of energy transfer between fluorescent proteins in a CFP-GBP-YFP construct and its response to Ca 2+. Physical Chemistry Chemical Physics 13:17852-63
[Abstract]

Topalis, P., Dialynas, E., Mitraka, E., Deliyanni, E., Siden-Kiamos, I, Louis C. (2011) A set of ontologies to drive tools for the control of vector-borne diseases. J Biomed. Inform. 44:42-7
[Abstract]

Troulinaki K., Tavernarakis N. (2011) Endocytosis and intracellular trafficking contribute to necrotic neurodegeneration in C. elegans. EMBO JOURNAL, 30: 1-13.
[Abstract]

Trusca GV, Fuior EV, Florea IC, Kardassis D, Simionescu M, Gafencu AV. (2011) Macrophage-specific upregulation of apolipoprotein E gene expression by STAT1 is achieved via long-range genomic interactions. J Biol Chem. 286:13891-904
[Abstract]

Tserevelakis G. J., Filippidis, G., Megalou E., Fotakis C. and Tavernarakis N. (2011) Cell tracking studies in live Caenorhabditis elegans embryos via Third Harmonic Generation imaging microscopy measurements. J Biomed Opt. 16:046019
[Abstract]

Tsiliki G, Zervakis M, Ioannou M, Sanidas E, Stathopoulos E, Potamias G, Tsiknakis M, Kafetzopoulos D. (2011) Multi-platform data integration in microarray analysis. IEEE Trans Inf Technol Biomed. 15:806-12
[Abstract]

Tsortos A, Papadakis G, Gizeli E. (2011) The intrinsic viscosity of linear DNA. Biopolymers 95:824-32
[Abstract]

Tzamali E, Poirazi P, Tollis IG, Reczko M. (2011) A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities. BMC Syst. Biology 5:167
[Abstract]

Vidaki M, Tivodar S, Doulgeraki K, Tybulewicz V, Kessaris N, Pachnis V, Karagogeos D. (2011) Rac1-Dependent Cell Cycle Exit of MGE Precursors and GABAergic Interneuron Migration to the Cortex. Cerebral Cortex 22:680-92
[Abstract]

Vougioukalaki M, Kanellis DC, Gkouskou K, Eliopoulos AG. (2011) Tpl2 kinase signal transduction in inflammation and cancer. Cancer Lett. 304:80-9
[Abstract]

Wang W, Karagogeos D, Kilpatrick DL. (2011) The effects of Tag-1 on the maturation of mouse cerebellar granule neurons. Cell Mol Neurobiol. 31:351-6
[Abstract]

Zoupi L, Savvaki M, Karagogeos D. (2011) Axons and myelinating glia: An intimate contact. IUBMB Life doi: 10.1002/iub.513. [Epub ahead of print]
[Abstract]