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2007

Apostolakis S, Krambovitis E, Vlata Z, Kochiadakis GE, Baritaki S, Spandidos DA. (2007) CX3CR1 receptor is up-regulated in monocytes of coronary artery diseased patients: Impact of pre-inflammatory stimuli and renin-angiotensin system modulators. Thromb Res. 121:387-95
[Abstract]

Apostolova G, Dorn R, Ka S, Hallbook F, Lundeberg J, Liser K, Hakim V, Brodski C, Michaelidis TM, Dechant G. (2007). Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol. Cell. Neurosci. 35:397-408.
[Abstract]

Bazopoulou D, Tavernarakis N. (2007) Mechanosensitive Ion Channels in Caenorhabditis elegans.Curr Top Membr. 2007;59:49-79. doi: 10.1016/S1063-5823(06)59003-9. Epub 2007 Apr 17.

Baud C, de Marcos-Lousa C, Tokatlidis K. (2007) Molecular interactions of the mitochondrial Tim12 translocase subunit. Protein Pept Lett. 14:597-600
[Abstract]

Bejarano F, Perez L, Apidianakis Y, Delidakis C, Milan M. (2007) Hedgehog restricts its expression domain in the Drosophila wing. EMBO Rep. 8:778-83
[Abstract]

Boneca IG, Dussurget O, Cabanes D, Nahori MA, Sousa S, Lecuit M, Psylinakis E, Bouriotis V, Hugot JP, Giovannini M, Coyle A, Bertin J, Namane A, Rousselle JC, Cayet N, Prévost MC, Balloy V, Chignard M, Philpott DJ, Cossart P, Girardin SE. (2007) A critical role for peptidoglycan N-deacetylation in Listeria evasion from the host innate immune system. Proc Natl Acad Sci U S A 104:997-1002
[Abstract]

Chatzidakis I, Fousteri G, Tsoukatou D, Kollias G, Mamalaki C. (2007) An essential role for TNF in modulating thresholds for survival, activation, and tolerance of CD8+ T cells. J Immunol. 178:6735-45
[Abstract]

Dialynas GK, Terjung S, Brown JP, Aucott RL, Baron-Luhr B, Singh PB, Georgatos SD. (2007) Plasticity of HP1 proteins in mammalian cells. J Cell Sci., 120:3415-24
[Abstract]
 
Drosatos K, Sanoudou D, Kypreos KE, Kardassis D, Zannis VI., (2007) A dominant negative form of the transcription factor C-jun affects genes that have opposing effects on lipid homeostasis in mice. J Biol Chem. 282:19556-64

[Abstract]

Fadouloglou VE, Deli A, Glykos NM, Psylinakis E, Bouriotis V, Kokkinidis M. (2007) Crystal structure of the BcZBP, a zinc-binding protein from Bacillus cereus. FEBS Journal 274:3044-54
[Abstract]

Farsari M, Filippidis G, Drakakis TS, Sambani K, Georgiou S, Papadakis G, Gizeli E, Fotakis C. (2007) Three-dimensional biomolecule patterning. Applied Surface Science 253:8115-18
[Abstract]

Gafencu AV, Robciuc MR, Fuior EV, Zannis VI, Kardassis D, Simionescu M., (2007) Inflammatory signaling pathways regulating ApoE gene expression in macrophages. J Biol Chem. 282:21776-85
[Abstract]

Garofalakis A, Zacharakis G, Meyer H, Economou EN, Mamalaki C, Papamatheakis J, Kioussis D, Ntziachristos V, Ripoll J. (2007) Three-dimensional in vivo imaging of green fluorescent protein-expressing T cells in mice with noncontact fluorescence molecular tomography. Mol Imaging 6:96-107
[Abstract]

Gelis I, Bonvin AM, Keramisanou D, Koukaki M, Gouridis G, Karamanou S, Economou A, Kalodimos CG. (2007) Structural Basis for Signal-Sequence, Recognition by the Translocase Motor SecA as Determined by NMR. Cell 131:756-69
[Abstract] Comment in Faculty 1000

Gentle IE, Perry AJ, Alcock FH, Likic VA, Dolezal P, Ng ET, Purcell AW, McConnville M, Naderer T, Chanez AL, Charriere F, Aschinger C, Schneider A, Tokatlidis K, Lithgow T. (2007) Conserved motifs reveal details of ancestry and structure in the small TIM chaperones of the mitochondrial intermembrane space. Molecular Biology and Evolution 24:1149-60
[Abstract]

Gligoris T, Thireos G, & Tzamarias D (2007) The Tup1 co repressor directs Htz1 deposition at a specific promoter nucleosome marking the GAL1 gene for rapid activation. Mol. Cell. Biol. 27:4198-205
[Abstract]

Ioannidis P, Hotopp JC, Sapountzis P, Siozios S, Tsiamis G, Bordenstein SR, Baldo L, Werren JH, Bourtzis K. (2007) New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria. BMC Genomics 8:182
[Abstract]

Kalantidis K, Denti MA, Tzortzakaki S, Marinou E, Tabler M, Tsagris M. (2007) Virp1 is a host protein with a major role in Potato spindle tuber viroid infection in Nicotiana plants. J Virol. 81:12872-80
[Abstract]

Kapetaniou EG, Kotsifaki D, Providaki M, Rina M, Bouriotis V, Kokkinidis M. (2007) Purification, crystallization and preliminary X-ray analysis of the BseCI DNA methyltransferase from Bacillus stearothermophilus in complex with its cognate DNA. Acta Crystallogr Sect F Struct Biol Cryst Commun. 63(Pt 1):12-4
[Abstract]

Karamanou S, Gouridis G, Papanikou E, Sianidis G, Gelis I, Keramisanou D, Vrontou E, Kalodimos CG, Economou A.  (2007) Preprotein-controlled catalysis in the helicase motor of SecA. EMBO J. 26:2904-14
[Abstract] See also relevant Faculty of 1000 comment

Karvounaris SA, Sidiropoulos PI, Papadakis JA, Spanakis EK, Bertsias GK, Kritikos HD, Ganotakis ES, Boumpas DT. (2007) Metabolic syndrome is common among middle-to-older aged Mediterranean patients with rheumatoid arthritis and correlates with disease activity: a retrospective, cross-sectional, controlled, study. Ann Rheum Dis. 66:28-33
[Abstract]

Koscianska E, Baev V, Skreka K, Oikonomaki K, Rusinov V, Tabler M, Kalantidis K. (2007) Prediction and preliminary validation of oncogene regulation by miRNAs. BMC Mol Biol. 8:79
[Abstract]

Koukos G, Chroni A, Duka A, Kardassis D, Zannis VI. (2007) LCAT can rescue the abnormal phenotype produced by the natural ApoA-I mutations (Leu141Arg) Pisa and (Leu159Arg)(FIN). Biochemistry 46:10713-21
[Abstract]

Koukos G, Chroni A, Duka A, Kardassis D, Zannis VI. (2007) Naturally occurring and bioengineered apoA-I mutations that inhibit the conversion of discoidal to spherical HDL: the abnormal HDL phenotypes can be corrected by treatment with LCAT. Biochem J. 406:167-74
[Abstract]

Kourtis N. and Tavernarakis N. (2007) Non - developmentally programmed cell death in Caenorhabditis elegans. Seminars in Cancer Biology 17:122-33
[Abstract]

Lagos D, Koukidou M, Savakis C, Komitopoulou K. (2007) The transformer gene in Bactrocera oleae: the genetic switch that determines its sex fate. Insect Molecular Biology 16:221-30
[Abstract]

Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Emmert D, Hammond M, Hill CA, Kennedy RC, Lobo NF, MacCallum MR, Madey G, Megy K, Redmond S, Russo S, Severson DW, Stinson EO, Topalis P, Zdobnov EM, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH. (2007) VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Res. 35(Database issue):D503-5
[Abstract]

Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. (2007) The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. NUCLEIC ACIDS RESEARCH, 36: D475-479
[Abstract]

Lo N, Paraskevopoulos C, Bourtzis K, O'Neill SL, Werren JH, Bordenstein SR, Bandi C. (2007) Taxonomic status of the intracellular bacterium Wolbachia pipientis. Int J Syst Evol Microbiol. 57:654-7
[Abstract]

Maiuri M. C., Le Toumelin G., Criollo A., Rain J. C., Gautier F., Juin P., Tasdemir E., Pierron G., Troulinaki K., Tavernarakis N., Hickman J. A., Geneste O. and Kroemer G. (2007) Functional and physical interaction between Bcl-X(L) and a BH3-like domain in Beclin-1. EMBO Journal 26:2527-39
[Abstract]

Markaki M, Drabek D, Livadaras I, Craig RK, Grosveld F, Savakis C. (2007) Stable expression of human growth hormone over 50 generations in transgenic insect larvae. Transgenic Research 16:99-107
[Abstract]

Meramveliotaki C, Kotsifaki D, Androulaki M, Hountas A, Eliopoulos E, Kokkinidis M. (2007) Purification, crystallization, X-ray diffraction analysis and phasing of an engineered single-chain PvuII restriction endonuclease. Acta Crystallogr Sect F Struct Biol Cryst Commun. 63:836-8
[Abstract]

Meyer H, Garofalakis A, Zacharakis G, Psycharakis S, Mamalaki C, Kioussis D, Economou EN, Ntziachristos V, Ripoll J. (2007) Noncontact optical imaging in mice with full angular coverage and automatic surface extraction. Appl Opt. 46:3617-27
[Abstract]

Michalakis J, Georgatos SD, de Bree E, Polioudaki H, Romanos J, Georgoulias V, Tsiftsis DD, Theodoropoulos PA. (2007) Short-term exposure of cancer cells to micromolar doses of paclitaxel, with or without hyperthermia, induces long-term inhibition of cell proliferation and cell death in vitro. Ann Surg Oncol., 14:1220-8
[Abstract]
 

Morikis D, Rizos AK, Spandidos DA, Krambovitis E. (2007) Electrostatic modeling of peptides derived from the V3-loop of HIV-1 gp120: Implications of the interaction with chemokine receptor CCR5. Int J Mol Med. 19:343-51
[Abstract]

Murphy, C. (2007) Endo-fin-ally a SARA for BMP receptors. J Cell Sci. 120: 1153-1155
[Abstract]
 

Neonakis IK, Gitti Z, Baritaki M, Kourbeti IS, Baritaki S, Petinaki E, Maraki S, Krambovitis E, Spandidos DA. (2007) Resistance status of Mycobacterium tuberculosis on the island of Crete, Greece. Eur J Clin Microbiol Infect Dis. 26:607-9

[Abstract]

Neonakis IK, Gitti Z, Kourbeti IS, Michelaki H, Baritaki M, Alevraki G, Papadomanolaki E, Tsafaraki E, Tsouri A, Baritaki S, Krambovitis E, Spandidos DA. (2007) Mycobacterial species diversity at a general hospital on the island of Crete: First detection of Mycobacterium lentiflavum in Greece. Scand J Infect Dis. 39:875-9
[Abstract]

Palaiomylitou M, Tartas A, Vlachakis D, Tzamarias D, Vlassi M. (2007) Investigating the structural stability of the Tup1-interaction domain of Ssn6: evidence for a conformational change on the complex. Proteins 70:72-82
[Abstract]

Papadaki C, Alexiou M, Cecena G, Verykokakis M, Bilitou A, Cross JC, Oshima RG, Mavrothalassitis G. (2007) Transcriptional repressor erf determines extraembryonic ectoderm differentiation. Mol Cell Biol. 27:5201-13
[Abstract]

Papanikolau Y, Papadovasilaki M, Ravelli RB, McCarthy AA, Cusack S, Economou A, Petratos K. (2007) Structure of dimeric SecA, the Escherichia coli preprotein translocase motor. Journal Of Molecular Biology 366:1545-57
[Abstract]

Papanikou E, Karamanou S, Economou A. (2007) Bacterial protein secretion through the translocase nanomachine. Nat Rev Microbiol. 5:839-51
[Abstract]

Passam AM, Sourvinos G, Krambovitis E, Miyakis S, Stavrianeas N, Zagoreos I, Spandidos DA. (2007) Polymorphisms of Cx(3)CR1 and CXCR6 receptors in relation to HAART therapy of HIV type 1 patients. AIDS Res Hum Retroviruses. 23:1026-32
[Abstract]

Pastore A, Martin SR, Politou AS, Stemmler T, Temussi PA (2007) Unbiased cold denaturation: low and high temperature unfolding of yeast frataxin under physiological conditions. J. Am. Chem. Soc., 129:5474-5475
[Abstract]

Pissadaki EK, Poirazi P. (2007) Modulation of excitability in CA1 pyramidal neurons via the interplay of entorhinal cortex and CA3 inputs. Neurocomputing 70:1735-40
[Abstract]

Poirazi P, Leroy F, Georgalaki MD, Aktypis A, De Vuyst L, Tsakalidou E. (2007) Use of artificial neural networks and a gamma-concept-based approach to model growth of and bacteriocin production by Streptococcus macedonicus ACA-DC 198 under simulated conditions of Kasseri cheese production. Appl Environ Microbiol. 73:768-76
[Abstract]

Porichis F, Vlata Z, Hatzidakis G, Spandidos D, Krambovitis E. (2007) HIV-1 gp120/V3-derived epitopes promote activation-induced cell death to superantigen-stimulated CD4(+)/CD45RO(+) T cells. Immunol Lett.108:97-102
[Abstract]

Prokova V, Mavridou S, Papakosta P, Petratos K, Kardassis D., (2007) Novel mutations in Smad proteins that inhibit signaling by the transforming growth factor beta in mammalian cells. Biochemistry 46:13775-86
[Abstract]

Psifogeorgou K, Papakosta P, Russo SJ, Neve RL, Kardassis D, Gold SJ, Zachariou V. (2007) RGS9-2 is a negative modulator of mu-opioid receptor function. J Neurochem. 103:617-25
[Abstract]

Ritou E, Bai M, Georgatos SD. (2007) Variant-specific patterns and humoral regulation of HP1 proteins in human cells and tissues. J Cell Sci., 120:3425-35
[Abstract]
 

Rizos AK, Baritaki S, Tsikalas I, Doetschman DC, Spandidos DA, Krambovitis E. (2007) Biophysical characterization of V3-lipopeptide liposomes influencing HIV-1 infectivity. Biochem Biophys Res Commun. 355:963-9

[Abstract]

Shenkman L, Koukaki M, Karamanou S, Economou A. (2007) The P. CEZANNE Project: innovative approaches to continuous glucose Monitoring. Conf Proc IEEE Eng Med Biol Soc. 2007:6061-4
[Abstract]

Sideris, D.P. and Tokatlidis, K. (2007) Oxidative folding of small Tims mediated by site-specific docking onto Mia40 in the mitochondrial intermembrane space. Mol. Microbiol. 65:1360-73
[Abstract]

Stanulovic VS, Kyrmizi I, Kruithof-de Julio M, Hoogenkamp M, Vermeulen JL, Ruijter JM, Talianidis I, Hakvoort TB, Lamers WH. (2007) Hepatic HNF4 alpha deficiency induces periportal expression of glutamine synthetase and other pericentral enzymes. Hepatology 45:433-44
[Abstract]

Stavroulaki M, Kardassis D, Chatzaki E, Sakellaris G, Lindschau C, Haller H, Tosca A, Krasagakis K. (2007) Exposure of normal human melanocytes to a tumor promoting phorbol ester reverses growth suppression by transforming growth factor beta. J Cell Physiol. 214:363-70
[Abstract]

Stefan A, Tabler M, Hochkoeppler A. (2007) Efficient silencing of the gene coding for the epsilon subunit of DNA polymerase III in Escherichia coli is triggered by antisense RNAs featuring stability in vivo. FEMS Microbiology Letters 270:277-83
[Abstract]

Strigini M, Karagogeos D. (2007) The role of sphingolipids, glycolipids and phospholipids in the Drosophila epithelial and glial permeability barriers. Naunyn-Schmiedebergs Archives Of Pharmacology 374:346-346
[Abstract]

Syntichaki P. Troulinaki K. and Tavernarakis N. (2007) Protein  synthesis is a novel determinant of aging in Caenorhabditis elegans.  Annals of the New York Academy of Sciences 1119:289-95
[Abstract]

Syntichaki P, Troulinaki K. and Tavernarakis N. (2007) elF4E function in somatic cells modulates ageing in Caenorhabditis elegans. Nature  445:922-6
[Abstract] See also the Editor's summary in Nature and this commentary in JCB

Tavernarakis N. (2007) Protein synthesis and aging: eIF4E and the soma vs. germline distinction. Cell Cycle. 6:1168-71
[Abstract]

Tavernarakis N. (2007) Editorial: diseases of the brain--neuronal function and dysfunction. Biotechnol J. 2:518-9
[Abstract]

Tavernarakis N. (2007) Cardiomyocyte necrosis: alternative mechanisms, effective interventions. Biochim Biophys Acta. 1773:480-2
[Abstract]

Thymiakou E, Zannis VI, Kardassis D. (2007) Physical and functional interactions between liver X receptor/retinoid X receptor and Sp1 modulate the transcriptional induction of the human ATP binding cassette transporter A1 gene by oxysterols and retinoids. Biochemistry 46:11473-83
[Abstract]

Tirard M, Almeida OF, Hutzler P, Melchior F, Michaelidis TM. (2007) Sumoylation and proteasomal activity determine the transactivation properties of the mineralocorticoid receptor. Mol. Cell. Endocrinol. 268:20-29
[Abstract]

Tsibidis G. D. and Tavernarakis N. (2007) Nemo: a computational tool for analyzing nematode locomotion. BMC Neuroscience 8:86
[Abstract]

Tzimourakas A, Giasemi S, Mouratidou M, Karagogeos D. (2007) Structure-function analysis of protein complexes involved in the molecular architecture of juxtaparanodal regions of myelinated fibers. Biotechnol J. 2:577-83
[Abstract]

Vergnolle, M.A.S., Alcock, F.H., Petrakis, N. and Tokatlidis  K. (2007) Mutation of conserved charged residues in mitochondrial TIM10 subunits precludes TIM10 complex assembly, but does not abolish growth of yeast cells. J. Mol. Biol. 371:1315-24
[Abstract]

Ververidis F, Trantas E, Douglas C, Vollmer G, Kretzschmar G, Panopoulos N. (2007) Biotechnology of flavonoids and other phenylpropanoid-derived natural products. Part II: Reconstruction of multienzyme pathways in plants and microbes. Biotechnol J. 2:1235-49
[Abstract]

Ververidis F, Trantas E, Douglas C, Vollmer G, Kretzschmar G, Panopoulos N. (2007) Biotechnology of flavonoids and other phenylpropanoid-derived natural products. Part I: Chemical diversity, impacts on plant biology and human health. Biotechnol J. 2:1214-34
[Abstract]

Verykokakis M, Papadaki C, Vorgia E, Le Gallic L, Mavrothalassitis G. (2007) The RAS-dependent ERF control of cell proliferation and differentiation is mediated by c-Myc repression. J Biol Chem. 282:30285-94
[Abstract]

Vontas J, David JP, Nikou D, Hemingway J, Christophides GK, Louis C, Ranson H. (2007) Transcriptional analysis of insecticide resistance in Anopheles stephensi using cross-species microarray hybridization. Insect Mol Biol. 16:315-24
[Abstract]

Wang E, Koutsioulis D, Leiros H, Ole A, Bouriotis V, Hough E, Heikinheimo P. (2007) Crystal structure of alkaline phosphatase from the Antarctic bacterium TAB5. J. Mol. Biol. 366:1318-31
[Abstract]

Wong D., Bazopoulou D., Pujol N., Tavernarakis N. and Ewban k J. (2007) Genome-wide investigation reveals pathogen-specific and shared signatures in the response of C. elegans to infection. Genome Biology 8:R194
[Abstract]

Zacharioudakis I, Gligoris T, Tzamarias D. (2007) A yeast catabolic enzyme controls transcriptional memory.Curr Biol.  17:2041-6 
[Abstract] See relevant dispatch by M Ptashne