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2012

Allegra M, Zaragkoulias A, Vorgia E, Ioannou M, Litos G, Beug H, Mavrothalassitis G. (2012) Semaphorin-7a reverses the ERF-induced inhibition of EMT in Ras-dependent mouse mammary epithelial cells. Mol Biol Cell. 23:3873-81
[Abstract]

Anisimov VN, Bartke A, Barzilai N, Batin MA, Blagosklonny MV, Brown-Borg H, Budovskaya Y, Campisi J, Friguet B, Fraifeld V, Franceschi C, Gems D, Gladyshev V, Gorbunova V, Gudkov AV, Kennedy B, Konovalenko M, Kraemer B, Moskalev A, Petropoulos I, Pasyukova E, Rattan S, Rogina B, Seluanov A, Shaposhnikov M, Shmookler Reis R, Tavernarakis N, Vijg J, Yashin A, Zimniak P. (2012) The Second International Conference "Genetics of Aging and Longevity". Aging 4:305-17
[Abstract]

Banci L, Bertini I, Calderone V, Cefaro C, Ciofi-Baffoni S, Gallo A, Tokatlidis K. (2012) An Electron-Transfer Path through an Extended Disulfide Relay System: The Case of the Redox Protein ALR. J Am Chem Soc. 134:1442-5
[Abstract]

Bazakos C, Manioudaki ME, Therios I, Voyiatzis D, Kafetzopoulos D, Awada T, Kalaitzis P. (2012) Comparative transcriptome analysis of two olive cultivars in response to NaCl-stress. PLoS One. 7:e42931
[Abstract]

Boubali S, Liopeta K, Virgilio L, Thyphronitis G, Mavrothalassitis G, Dimitracopoulos G, Paliogianni F. (2012) Calcium/calmodulin-dependent protein kinase II regulates IL-10 production by human T lymphocytes: a distinct target in the calcium dependent pathway. Mol Immunol. 52:51-60
[Abstract]

Chatzi K. E, Sardis M. F, Karamanou S, Economou A. (2012) Breaking on through to the other side: protein export through the bacterial Sec system. Biochemical Journal 449:25–37
[Abstract]

Deligianni C, Spilianakis CG. (2012) Long-range genomic interactions epigenetically regulate the expression of a cytokine receptor. EMBO Rep. 13:819-26
[Abstract]

Denaxa M, Kalaitzidou M, Garefalaki A, Achimastou A, Lasrado R, Maes T, Pachnis V. (2012) Maturation-promoting activity of SATB1 in MGE-derived cortical interneurons. Cell Rep. 2:1351-62
[Abstract]

Diaconu I, Cerullo V, Hirvinen ML, Escutenaire S, Ugolini M, Pesonen SK, Bramante S, Parviainen S, Kanerva A, Loskog AS, Eliopoulos AG, Pesonen S, Hemminki A. (2012) Immune response is an important aspect of the antitumor effect produced by a CD40L-encoding oncolytic adenovirus. Cancer Res. 72:2327-38
[Abstract]

Dikić J, Menges C, Clarke S, Kokkinidis M, Pingoud A, Wende W, Desbiolles P. (2012) The rotation-coupled sliding of EcoRV. Nucleic Acids Res. 40:4064-70
[Abstract]

Fanouriakis A, Krasoudaki E, Tzanakakis M, Boumpas DT. (2012) Recent progress in the treatment of lupus nephritis. Mod Rheumatol. 22:803-13
[Abstract]

Favicchio R, Zacharakis G, Oikonomaki K, Zacharopoulos A, Mamalaki C, Ripoll J. (2012) Kinetics of T-cell receptor-dependent antigen recognition determined in vivo by multi-spectral normalized epifluorescence laser scanning. J Biomed Opt. 17:076013
[Abstract]

Gazi AD, Sarris PF, Fadouloglou VE, Charova SN, Mathioudakis N, Panopoulos NJ, Kokkinidis M. (2012) Phylogenetic analysis of a gene cluster encoding an additional, rhizobial-like type III secretion system that is narrowly distributed among Pseudomonas syringae strains. BMC Microbiology 2;12:188
[Abstract]

Gessmann R, Axford D, Evans G, Brückner H, Petratos K. (2012) The crystal structure of samarosporin I at atomic resolution. J. Pept. Sci. 18:678-84
[Abstract]

Gessmann R, Axford D, Owen R. L, Brückner H, Petratos K. (2012) Four complete turns of a curved 3(10)-helix at atomic resolution: The crystal structure of the peptaibol trichovirin I‑4A in polar environment suggests a transition to aplha-helix for membrane function. Acta Crystallogr. D68:109-16
[Abstract]

Ioannou M, Alissafi T, Lazaridis I, Deraos G, Matsoukas J, Gravanis A, Mastorodemos V, Plaitakis A, Sharpe A, Boumpas D, Verginis P. (2012) Crucial role of granulocytic myeloid-derived suppressor cells in the regulation of central nervous system autoimmune disease. J Immunol. 188:1136-46
[Abstract]

Johnson MA, Tsai L, Roy DS, Valenzuela DH, Mosley C, Magklara A, Lomvardas S, Liberles SD, Barnea G. (2012) Neurons expressing trace amine-associated receptors project to discrete glomeruli and constitute an olfactory subsystem. Proc Natl Acad Sci U S A 14;109(33):13410-5
[Abstract]
 

Kallergi E, Andreadaki M, Kritsiligkou P, Katrakili N, Pozidis C, Tokatlidis K, Banci L, Bertini I, Cefaro C, Ciofi-Baffoni S, Gajda K, Peruzzini R. (2012) Targeting and maturation of Erv1/ ALR in the mitochondrial intermembrane space. ACS Chem. Biol. 7:707-14
[Abstract]

Kamileri I, Karakasilioti I, Garinis G. (2012) Nucleotide Excision Repair: New Tricks with Old Bricks. Trends Genet. 28:566-73
[Abstract]

Kamileri I, Karakasilioti I, Sideri A, Kosteas T, Tatarakis A, Talianidis I, Garinis GA. (2012) Defective transcription initiation causes postnatal growth failure in a mouse model of NER progeria. Proceedings of the National Academy of Sciences, USA 109:2995-3000
[Abstract]

Kefala K, Kotsifaki D, Providaki M, Kapetaniou EG, Rahme L, Kokkinidis M. (2012) Purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal fragment of the MvfR protein from Pseudomonas aeruginosa. Acta Crystallogr Sect F Struct Biol Cryst Commun. 68:695-7
[Abstract]

Klionsky D. J, ... Markaki M, ... Tavernarakis N. et al. (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8:445-544
[Abstract]

Kourtis N, Nikoletopoulou V, Tavernarakis N. (2012) Heat shock response and ionstasis: axis against neurodegeneration. Aging 4:856-8
[Abstract]

Kourtis N, Nikoletopoulou V, Tavernarakis N. (2012) Small heat shock proteins protect from heat stroke-associated neurodegeneration. Nature 490:213-8
[Abstract]

Kretsovali A, Hadjimichael C, Charmpilas N. (2012) Histone deacetylase inhibitors in cell pluripotency, differentiation, and reprogramming. Stem Cells Int. 2012:184154
[Abstract]

Magklara A, Lomvardas S. (2012) Epigenetics and Human Disease (book chapter). "Gene Regulatory Sequences and Human Disease", editor Nadav Ahituv, Springer New York
[Abstract]
 
Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, Hughes DS, Koscielny G, Louis C, Maccallum RM, Redmond SN, Sheehan A, Topalis P, Wilson D. (2012) VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. Nucleic Acids Res. 40:D729-34
[Abstract]

Mitsakakis K, Sekula-Neuner S, Lenhert S, Fuchs H, Gizeli E. (2012) Convergence of Dip-Pen Nanolithography and acoustic biosensors towards a rapid-analysis multi-sample microsystem. Analyst 137:3076-82
[Abstract]

Moschonas A, Ioannou M, Eliopoulos AG. (2012) CD40 stimulates a "feed-forward" NF-κB-driven molecular pathway that regulates IFN-β expression in carcinoma cells. J Immunol. 188:5521-7
[Abstract]

Nikoletopoulou V, Tavernarakis N. (2012) Calcium homeostasis in aging neurons. Front Genet. 3:200
[Abstract]

Nikoletopoulou V, Tavernarakis N. (2012) Embryonic and induced pluripotent stem cell differentiation as a tool in neurobiology. Biotechnol J. 7:1156-68
[Abstract]

Oulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P. (2012) A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2. RNA Biology 9:1196-1207
[Abstract]

Palikaras K, Tavernarakis N. (2012) Mitophagy in neurodegeneration and aging. Frontiers in Genetics 3: 297
[Abstract]

Papadakis G, Tsortos A, Bender F, Ferapontova E.E, Gizeli E. (2012) Direct detection of DNA conformation in hybridization processes. Analytical Chemistry 84:1854-61
[Abstract]

Papadakis G, Gizeli E. (2012) In silico search of DNA drugs targeting oncogenes. IEEE/ACM Trans Comput Biol Bioinform. 9:1826-30
[Abstract]

Parikh PP, Zheng J, Logan-Klumpler F, Stoeckert CJ Jr, Louis C, Topalis P, Protasio AV, Sheth AP, Carrington M, Berriman M, Sahoo SS. (2012)The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms. J Biomed Semantics;3(1):5. doi: 10.1186/2041-1480-3-5.
[Abstract]

Pavlidi N, Monastirioti M, Daborn P, Livadaras I, Van Leeuwen T, Vontas J. (2012) Transgenic expression of the Aedes aegypti CYP9J28 confers pyrethroid resistance in Drosophila melanogaster. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY. 104 (2):132-135, OCT 2012, DOI: 10.1016/j.pestbp.2012.07.003
[Abstract]

Saitakis M, Gizeli E. (2012) Acoustic sensors as a biophysical tool for probing cell attachment and cell/surface interactions. Cellular and Molecular Life Sciences 69:357-71
[Abstract]

Sarrazin AF, Peel AD, Averof M. (2012) A Segmentation Clock with Two-Segment Periodicity in Insects. Science 336:338-41
[Abstract]

Sfikas A, Batsi C, Tselikou E, Vartholomatos G, Monokrousos N, Pappas P, Christoforidis S, Tzavaras T, Kanavaros P, Gorgoulis VG, Marcu, KB, Kolettas E. (2012) The canonical NF-κB pathway differentially protects normal and human tumor cells from ROS-induced DNA damage. Cell Signal. Nov;24(11):2007-23
[Abstract]

Siden-Kiamos I, Louis C, Matuschewski K. (2012) Evidence for filamentous actin in ookinetes of a malarial parasite. Mol Biochem Parasitol. 181:186-9
[Abstract]

Sidiropoulou K, Poirazi P. (2012) Predictive features of persistent activity emergence in regular spiking and intrinsic bursting model neurons. PLoS Comput Biol. 8:e1002489
[Abstract]

Soulitzis N, Neofytou E, Psarrou M, Anagnostis A, Tavernarakis N, Siafakas N, Tzortzaki EG. (2012) Downregulation of lung mitochondrial prohibitin in COPD. Respir Med. 106:954-61
[Abstract]

Tarcic G, Avraham R, Pines G, Amit I, Shay T, Lu Y, Zwang Y, Katz M, Ben-Chetrit N, Jacob-Hirsch J, Virgilio L, Rechavi G, Mavrothalassitis G, Mills GB, Domany E, Yarden Y. (2012) EGR1 and the ERK-ERF axis drive mammary cell migration in response to EGF. FASEB J. 26:1582-92
[Abstract]

Tilstra J, Robinson A, Wang J, Gregg S, Clauson C, Reay D, Nasto L, Croix C, Usas A, Vo N, Huard J, Clemens P, Stolz D, Guttridge D, Watkins SC, Garinis GA, Wang Y, Niedernhoffer L, Robbins P. (2012) NF-κB inhibition delays DNA damage-induced senescence and aging in mice. J Clin Invest. 122:2601-12
[Abstract]

Troulinaki K. and Tavernarakis N. (2012) Necrotic cell death and neurodegeneration: The involvement of endocytosis and intracellular trafficking. Worm, 1: 176-181
[Abstract]

Troulinaki K, Tavernarakis N. (2012) Endocytosis and intracellular trafficking contribute to necrotic neurodegeneration in C. elegans. EMBO Journal 31:654-66
[Abstract]

Trusca VG, Florea IC, Kardassis D, Gafencu AV. (2012) STAT1 interacts with RXRα to upregulate ApoCII gene expression in macrophages. PLoS One. 7:e40463
[Abstract]

Udriste AA, Stan V, Radu GL, Tabler M, Cucu N. (2012) Identification of a dicer homologue gene (DCL2) in Nicotiana tabacum. Plant Biol (Stuttg). 14:980-6
[Abstract]

Veneti Z, Zabalou S, Papafotiou G, Paraskevopoulos C, Pattas S, Livadaras I, Markakis G, Herren JK, Jaenike J, Bourtzis K. (2012) Loss of reproductive parasitism following transfer of male-killing Wolbachia to Drosophila melanogaster and Drosophila simulans. Heredity (Edinb). 109:306-12
[Abstract]

Vidaki M, Tivodar S, Doulgeraki K, Tybulewicz V, Kessaris N, Pachnis V, Karagogeos D. (2012) Rac1-dependent cell cycle exit of MGE precursors and GABAergic interneuron migration to the cortex. Cereb Cortex. 22:680-92
[Abstract]

Zacharioudaki E, Magadi SS, Delidakis C. (2012) bHLH-O proteins are crucial for Drosophila neuroblast self-renewal and mediate Notch-induced overproliferation. Development 139:1258-69
[Abstract]

Zhu S, Dong D, Birk U.J, Rieckher M, Tavernarakis N, Qu X, Liang J, Tian J, Ripoll J. (2012) Automated motion correction for in vivo Optical Projection Tomography. IEEE Transactions on Medical Imaging 31:1358-71                                                                            
[Abstract]

Zografou S, Basagiannis D, Papafotika A, Shirakawa R, Horiuchi H, Auerbach D, Fukuda M, Christoforidis S. (2012) A complete Rab screening reveals novel insights in Weibel-Palade body exocytosis. J Cell Sci 125: 4780-4790                                                        
[Abstract]