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2013 (60 papers)

Athanasiou LS, Karvelis PS, Sakellarios AI, Exarchos TP, Siogkas PK, Tsakanikas VD, Naka KK, Bourantas CV, Papafaklis MI, Koutsouri G, Michalis LK, Parodi O, Fotiadis DI. (2013) A hybrid plaque characterization method using intravascular ultrasound images. Technol Health Care. 21:199-216.
[Abstract]
Papadakis G, Tsortos A, Kordas A, Tiniakou I, Morou E, Vontas J, Kardassis D, Gizeli E. (2013) Acoustic detection of DNA conformation in genetic assays combined with PCR. Sci Rep. 3:2033.
[Abstract]
Banci L, Bertini I, Cefaro C, Ciofi-Baffoni S, Gajda K, Felli IC, Gallo A, Pavelkova A, Kallergi E, Andreadaki M, Katrakili N, Pozidis C, Tokatlidis K. (2013) An intrinsically disordered domain has a dual function coupled to compartment-dependent redox control. J Mol Biol. 425:594-608.
[Abstract]
Coburn C, Allman E, Mahanti P, Benedetto A, Cabreiro F, Pincus Z, Matthijssens F, Araiz C, Mandel A, Vlachos M, Edwards SA, Fischer G, Davidson A, Pryor RE, Stevens A, Slack FJ, Tavernarakis N, Braeckman BP, Schroeder FC, Nehrke K, Gems D. (2013) Anthranilate fluorescence marks a calcium-propagated necrotic wave that promotes organismal death in C. elegans. PLoS Biol. 11:e1001613.
[Abstract]
Bellou S, Pentheroudakis G, Murphy C, Fotsis T. (2013) Anti-angiogenesis in cancer therapy: Hercules and hydra. Cancer Lett. 338:219-228.
[Abstract]
Karvounis EC, Exarchos TP, Fotiou E, Sakellarios AI, Iliopoulou D, Koutsouris D, Fotiadis DI. (2013) ART-ML: a new markup language for modelling and representation of biological processes in cardiovascular diseases. Technol Health Care. 21:241-259.
[Abstract]
Lionaki E, Tavernarakis N. (2013) Assessing aging and senescent decline in Caenorhabditis elegans: cohort survival analysis. Methods Mol Biol. 965:473-484.
[Abstract]
Lionaki E, Markaki M, Tavernarakis N. (2013) Autophagy and ageing: insights from invertebrate model organisms. Ageing Res Rev. 12:413-428.
[Abstract]
Schiavi A, Torgovnick A, Kell A, Megalou E, Castelein N, Guccini I, Marzocchella L, Gelino S, Hansen M, Malisan F, Condò I, Bei R, Rea SL, Braeckman BP, Tavernarakis N, Testi R, Ventura N. (2013) Autophagy induction extends lifespan and reduces lipid content in response to frataxin silencing in C. elegans. Exp Gerontol. 48:191-201.
[Abstract]
Chatzi A, Sideris DP, Katrakili N, Pozidis C, Tokatlidis K. (2013) Biogenesis of yeast Mia40 - uncoupling folding from import and atypical recognition features. FEBS J. 280:4960-4969.
[Abstract]
Chatzi KE, Sardis MF, Karamanou S, Economou A. (2013) Breaking on through to the other side: protein export through the bacterial Sec system. Biochem J. 449:25-37.
[Abstract]
Kallergi E, Kalef-Ezra E, Karagouni-Dalakoura K, Tokatlidis K. (2013) Common players in mitochondria biogenesis and neuronal protection against stress-induced apoptosis. Neurochem Res. 39:546-555.
[Abstract]
Romani A, Marchetti C, Bianchi D, Leinekugel X, Poirazi P, Migliore M, Marie H. (2013) Computational modeling of the effects of amyloid-beta on release probability at hippocampal synapses. Front Comput Neurosci 7:1.
[Abstract]
Kyrmizi I, Gresnigt MS, Akoumianaki T, Samonis G, Sidiropoulos P, Boumpas D, Netea MG, van de Veerdonk FL, Kontoyiannis DP, Chamilos G. (2013) Corticosteroids block autophagy protein recruitment in Aspergillus fumigatus phagosomes via targeting dectin-1/Syk kinase signaling. J Immunol. 191:1287-1299
[Abstract]
Nikoletopoulou V, Markaki M, Palikaras K, Tavernarakis N. (2013) Crosstalk between apoptosis, necrosis and autophagy. Biochim Biophys Acta. 1833:3448-3459
[Abstract]
Dadami E, Boutla A, Vrettos N, Tzortzakaki S, Karakasilioti I, Kalantidis K. (2013) DICER-LIKE 4 but not DICER-LIKE 2 may have a positive effect on potato spindle tuber viroid accumulation in Nicotiana benthamiana. Mol Plant. 6:232-234.
[Abstract]
Stavride P, Arampatzi P, Papamatheakis J. (2013) Differential regulation of MHCII genes by PRMT6, via an AT-hook motif of RFX5. Mol Immunol. 56:390-398.
[Abstract]
Balomenou S, Fouet A, Tzanodaskalaki M, Couture-Tosi E, Bouriotis V, Boneca IG. (2013) Distinct functions of polysaccharide deacetylases in cell shape, neutral polysaccharide synthesis and virulence of Bacillus anthracis. Mol Microbiol. 87:867-883.
[Abstract]
Karakasilioti I, Kamileri I, Chatzinikolaou G, Kosteas T, Vergadi E, Robinson AR, Tsamardinos I, Rozgaja TA, Siakouli S, Tsatsanis C, Niedernhofer LJ, Garinis GA. (2013) DNA damage triggers a chronic autoinflammatory response, leading to fat depletion in NER progeria. Cell Metab. 18:403-415.
[Abstract]
Papadimitriou L, Zerva I, Georgouli M, Makatounakis T, Papamatheakis J, Athanassakis I. (2013) DOα⁻β⁺ expression in favor of HLA-DR engagement in exosomes. Immunobiology. 218:1019-1025.
[Abstract]
Büttner S, Habernig L, Broeskamp F, Ruli D, Vögtle FN, Vlachos M, Macchi F, Küttner V, Carmona-Gutierrez D, Eisenberg T, Ring J, Markaki M, Taskin AA, Benke S, Ruckenstuhl C, Braun R, Van den Haute C, Bammens T, van der Perren A, Fröhlich KU, Winderickx J, Kroemer G, Baekelandt V, Tavernarakis N, Kovacs GG, Dengjel J, Meisinger C, Sigrist SJ, Madeo F. (2013) Endonuclease G mediates α-synuclein cytotoxicity during Parkinson's disease. EMBO J. 32:3041-3054.
[Abstract]
Frangou EA, Bertsias GK, Boumpas DT. (2013) Gene expression and regulation in systemic lupus erythematosus. Eur J Clin Invest. 43:1084-1096.
[Abstract]
Arampatzi P, Gialitakis M, Makatounakis T, Papamatheakis J. (2013) Gene-specific factors determine mitotic expression and bookmarking via alternate regulatory elements. Nucleic Acids Res. 41:2202-2215.
[Abstract]
Mersha M, Formisano R, McDonald R, Pandey P, Tavernarakis N, Harbinder S. (2013) GPA-14, a Gα(i) subunit mediates dopaminergic behavioral plasticity in C. elegans. Behav Brain Funct. 9:16.
[Abstract]
Lionaki E, Tavernarakis N. (2013) High-throughput and longitudinal analysis of aging and senescent decline in Caenorhabditis elegans. Methods Mol Biol. 965:485-500.
[Abstract]
Homberg U, Seyfarth J, Binkle U, Monastirioti M, Alkema MJ. (2013) Identification of distinct tyraminergic and octopaminergic neurons innervating the central complex of the desert locust, Schistocerca gregaria. J Comp Neurol. 521:2025-2041.
[Abstract]
Topalis P, Mitraka E, Dritsou V, Dialynas E, Louis C. (2013) IDOMAL: the malaria ontology revisited. J Biomed Semantics. 4:16.
[Abstract]
Vazgiourakis VM, Zervou MI, Eliopoulos E, Sharma S, Sidiropoulos P, Franek BS, Myrthianou E, Melissourgaki M, Niewold TB, Boumpas DT, Goulielmos GN. (2013) Implication of VEGFR2 in systemic lupus erythematosus: a combined genetic and structural biological approach. Clin Exp Rheumatol. 31:97-102.
[Abstract]
Ioannou M, Alissafi T, Boon L, Boumpas D, Verginis P. (2013) In vivo ablation of plasmacytoid dendritic cells inhibits autoimmunity through expansion of myeloid-derived suppressor cells. J Immunol. 190:2631-2640.
[Abstract]
Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P. (2013) Induction and modulation of persistent activity in a layer V PFC microcircuit model.. Front Neural Circuits. 7:161.
[Abstract]
Nakou M, Papadimitraki ED, Fanouriakis A, Bertsias GK, Choulaki C, Goulidaki N, Sidiropoulos P, Boumpas DT. (2013) Interleukin-21 is increased in active systemic lupus erythematosus patients and contributes to the generation of plasma B cells. Clin Exp Rheumatol. 31:172-179.
[Abstract]
Emmanouilidou A, Karetsou Z, Tzima E, Kobayashi T, Papamarcaki T. (2013) Knockdown of prothymosin α leads to apoptosis and developmental defects in zebrafish embryos. Biochem Cell Biol. 91:325-332.
[Abstract]
Zervou MI, Myrthianou E, Flouri I, Plant D, Chlouverakis G, Castro-Giner F, Rapsomaniki P, Barton A, Boumpas DT, Sidiropoulos P, Goulielmos GN. (2013) Lack of association of variants previously associated with anti-TNF medication response in rheumatoid arthritis patients: results from a homogeneous Greek population. PLoS One. 8:e74375.
[Abstract]
Markaki M, Tavernarakis N. (2013) Metabolic control by target of rapamycin and autophagy during ageing - a mini-review. Gerontology. 59:340-348.
[Abstract]
Rödel CJ, Gilles AF, Averof M. (2013) MicroRNAs act as cofactors in bicoid-mediated translational repression. Curr Biol. 23:1579-1584.
[Abstract]
Nikoletopoulou V, Tavernarakis N. (2013) Mitochondrial biogenesis and dynamics in neurodegeneration: a causative relationship. Neurochem Res. 39:542-545.
[Abstract]
Manioudaki ME, Poirazi P. (2013) Modeling regulatory cascades using Artificial Neural Networks: the case of transcriptional regulatory networks shaped during the yeast stress response. Front Genet. 4:110.
[Abstract]
Lionaki E, Tavernarakis N. (2013) Oxidative stress and mitochondrial protein quality control in aging. J Proteomics. 92:181-194.
[Abstract]
Fanouriakis A, Boumpas DT, Bertsias GK. (2013) Pathogenesis and treatment of CNS lupus. Curr Opin Rheumatol. 25:577-583.
[Abstract]
Sasselli V, Boesmans W, Vanden Berghe P, Tissir F, Goffinet AM, Pachnis V. (2013) Planar cell polarity genes control the connectivity of enteric neurons. J Clin Invest. 123:1763-1772.
[Abstract]
Charlton JJ, Chatzidakis I, Tsoukatou D, Boumpas DT, Garinis GA, Mamalaki C. (2013) Programmed death-1 shapes memory phenotype CD8 T cell subsets in a cell-intrinsic manner. J Immunol. 190:6104-6114.
[Abstract]
Scaramuzzino C, Monaghan J, Milioto C, Lanson NA Jr, Maltare A, Aggarwal T, Casci I, Fackelmayer FO, Pennuto M, Pandey UB. (2013) Protein arginine methyltransferase 1 and 8 interact with FUS to modify its sub-cellular distribution and toxicity in vitro and in vivo. PLoS One. 8:e61576.
[Abstract]
Gouridis G, Karamanou S, Sardis MF, Schärer MA, Capitani G, Economou A. (2013) Quaternary dynamics of the SecA motor drive translocase catalysis. Mol Cell. 52:655-666.
[Abstract]
Twigg SR, Vorgia E, McGowan SJ, Peraki I, Fenwick AL, Sharma VP, Allegra M, Zaragkoulias A, Sadighi Akha E, Knight SJ, Lord H, Lester T, Izatt L, Lampe AK, Mohammed SN, Stewart FJ, Verloes A, Wilson LC, Healy C, Sharpe PT, Hammond P, Hughes J, Taylor S, Johnson D, Wall SA, Mavrothalassitis G, Wilkie AO. (2013) Reduced dosage of ERF causes complex craniosynostosis in humans and mice and links ERK1/2 signaling to regulation of osteogenesis. Nat Genet. 45:308-313.
[Abstract]
Kyrkou A, Soufi M, Bahtz R, Ferguson C, Bai M, Parton RG, Hoffmann I, Zerial M, Fotsis T, Murphy C. (2013) RhoD participates in the regulation of cell-cycle progression and centrosome duplication. Oncogene. 32:1831-1842.
[Abstract]
Kostaras E, Pedersen NM, Stenmark H, Fotsis T, Murphy C. (2013) SARA and RNF11 at the crossroads of EGFR signaling and trafficking. Methods Enzymol. 535:225-247.
[Abstract]
Kostaras E, Sflomos G, Pedersen NM, Stenmark H, Fotsis T, Murphy C. (2013) SARA and RNF11 interact with each other and ESCRT-0 core proteins and regulate degradative EGFR trafficking. Oncogene. 32:5220-5232.
[Abstract]
Magklara A, Lomvardas S. (2013) Stochastic gene expression in mammals: lessons from olfaction. Trends Cell Biol. 23:449-456.
[Abstract]
Fadouloglou VE, Kapanidou M, Agiomirgianaki A, Arnaouteli S, Bouriotis V, Glykos NM, Kokkinidis M. (2013) Structure determination through homology modelling and torsion-angle simulated annealing: application to a polysaccharide deacetylase from Bacillus cereus. Acta Crystallogr D Biol Crystallogr. 69:276-283.
[Abstract]
Chen L, Ai X, Portaliou AG, Minetti CA, Remeta DP, Economou A, Kalodimos CG. (2013) Substrate-activated conformational switch on chaperones encodes a targeting signal in type III secretion. Cell Rep. 3:709-715.
[Abstract]
Miliara S, Gkouskou KK, Sharp TV, Eliopoulos AG. (2013) SUMOylation is required for optimal TRAF3 signaling capacity. PLoS One. 8:e80470.
[Abstract]
Büttner S, Faes L, Reichelt WN, Broeskamp F, Habernig L, Benke S, Kourtis N, Ruli D, Carmona-Gutierrez D, Eisenberg T, D'hooge P, Ghillebert R, Franssens V, Harger A, Pieber TR, Freudenberger P, Kroemer G, Sigrist SJ, Winderickx J, Callewaert G, Tavernarakis N, Madeo F. (2013) The Ca2+/Mn2+ ion-pump PMR1 links elevation of cytosolic Ca(2+) levels to α-synuclein toxicity in Parkinson's disease models. Cell Death Differ. 20:465-477.
[Abstract]
Katidou M, Tavernarakis N, Karagogeos D. (2013) The contactin RIG-6 mediates neuronal and non-neuronal cell migration in Caenorhabditis elegans. Dev Biol. 373:184-195.
[Abstract]
Papanastasiou M, Orfanoudaki G, Koukaki M, Kountourakis N, Sardis MF, Aivaliotis M, Karamanou S, Economou A. (2013) The Escherichia coli peripheral inner membrane proteome. Mol Cell Proteomics. 12:599-610.
[Abstract]
Chatzi A, Tokatlidis K. (2013) The mitochondrial intermembrane space: a hub for oxidative folding linked to protein biogenesis. Antioxid Redox Signal. 19:54-62.
[Abstract]
Kypri E, Christodoulou A, Maimaris G, Lethan M, Markaki M, Lysandrou C, Lederer CW, Tavernarakis N, Geimer S, Pedersen LB, Santama N. (2013) The nucleotide-binding proteins Nubp1 and Nubp2 are negative regulators of ciliogenesis. Cell Mol Life Sci. 71:517-538
[Abstract]
Kyrkou A, Soufi M, Bahtz R, Ferguson C, Bai M, Parton RG, Hoffmann I, Zerial M, Fotsis T, Murphy C. (2013) The RhoD to centrosomal duplication. Small GTPases. 4:116-122.
[Abstract]
Kux K, Kiparaki M, Delidakis C. (2013) The two Tribolium E(spl) genes show evolutionarily conserved expression and function during embryonic neurogenesis. Mech Dev. 130:207-225.
[Abstract]
Gkirtzimanaki K, Gkouskou KK, Oleksiewicz U, Nikolaidis G, Vyrla D, Liontos M, Pelekanou V, Kanellis DC, Evangelou K, Stathopoulos EN, Field JK, Tsichlis PN, Gorgoulis V, Liloglou T, Eliopoulos AG. (2013) TPL2 kinase is a suppressor of lung carcinogenesis. Proc Natl Acad Sci U S A. 110:E1470-1479.
[Abstract]
Kyrmizi I, Ioannou M, Hatziapostolou M, Tsichlis PN, Boumpas DT, Tassiulas I. (2013) Tpl2 kinase regulates FcγR signaling and immune thrombocytopenia in mice. J Leukoc Biol. 94:751-7.
[Abstract]

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