2007 (73 papers)

Apostolakis S, Krambovitis E, Vlata Z, Kochiadakis GE, Baritaki S, Spandidos DA. (2007) CX3CR1 receptor is up-regulated in monocytes of coronary artery diseased patients: Impact of pre-inflammatory stimuli and renin-angiotensin system modulators. Thromb Res. 121:387-395.
[Abstract]

Apostolova G, Dorn R, Ka S, Hallbook F, Lundeberg J, Liser K, Hakim V, Brodski C, Michaelidis TM, Dechant G. (2007). Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol Cell Neurosci. 35:397-408.
[Abstract]

Baud C, de Marcos-Lousa C, Tokatlidis K. (2007) Molecular interactions of the mitochondrial Tim12 translocase subunit. Protein Pept Lett. 14:597-600.
[Abstract]

Bejarano F, Perez L, Apidianakis Y, Delidakis C, Milan M. (2007) Hedgehog restricts its expression domain in the Drosophila wing. EMBO Rep. 8:778-783.
[Abstract]

Boneca IG, Dussurget O, Cabanes D, Nahori MA, Sousa S, Lecuit M, Psylinakis E, Bouriotis V, Hugot JP, Giovannini M, Coyle A, Bertin J, Namane A, Rousselle JC, Cayet N, Prévost MC, Balloy V, Chignard M, Philpott DJ, Cossart P, Girardin SE. (2007) A critical role for peptidoglycan N-deacetylation in Listeria evasion from the host innate immune system. Proc Natl Acad Sci U S A. 104:997-1002.
[Abstract]

Chatzidakis I, Fousteri G, Tsoukatou D, Kollias G, Mamalaki C. (2007) An essential role for TNF in modulating thresholds for survival, activation, and tolerance of CD8+ T cells. J Immunol. 178:6735-6745.
[Abstract]

Fadouloglou VE, Deli A, Glykos NM, Psylinakis E, Bouriotis V, Kokkinidis M. (2007) Crystal structure of the BcZBP, a zinc-binding protein from Bacillus cereus. FEBS J. 274:3044-3054.
[Abstract]

Farsari M, Filippidis G, Drakakis TS, Sambani K, Georgiou S, Papadakis G, Gizeli E, Fotakis C. (2007) Three-dimensional biomolecule patterning. Appl Surf Sci. 253:8115-8118.
[Abstract]

Gafencu AV, Robciuc MR, Fuior EV, Zannis VI, Kardassis D, Simionescu M., (2007) Inflammatory signaling pathways regulating ApoE gene expression in macrophages. J Biol Chem. 282:21776-21785.
[Abstract]

Garofalakis A, Zacharakis G, Meyer H, Economou EN, Mamalaki C, Papamatheakis J, Kioussis D, Ntziachristos V, Ripoll J. (2007) Three-dimensional in vivo imaging of green fluorescent protein-expressing T cells in mice with noncontact fluorescence molecular tomography. Mol Imaging. 6:96-107.
[Abstract]

Gelis I, Bonvin AM, Keramisanou D, Koukaki M, Gouridis G, Karamanou S, Economou A, Kalodimos CG. (2007) Structural Basis for Signal-Sequence, Recognition by the Translocase Motor SecA as Determined by NMR. Cell. 131:756-769.
[Abstract] Comment in Faculty 1000

Gentle IE, Perry AJ, Alcock FH, Likic VA, Dolezal P, Ng ET, Purcell AW, McConnville M, Naderer T, Chanez AL, Charriere F, Aschinger C, Schneider A, Tokatlidis K, Lithgow T. (2007) Conserved motifs reveal details of ancestry and structure in the small TIM chaperones of the mitochondrial intermembrane space. Mol Biol Evol. 24:1149-1160.
[Abstract]

Gligoris T, Thireos G, Tzamarias D. (2007) The Tup1 co repressor directs Htz1 deposition at a specific promoter nucleosome marking the GAL1 gene for rapid activation. Mol Cell Biol. 27:4198-4205.
[Abstract]

Ioannidis P, Hotopp JC, Sapountzis P, Siozios S, Tsiamis G, Bordenstein SR, Baldo L, Werren JH, Bourtzis K. (2007) New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria. BMC Genomics. 8:182.
[Abstract]

Kalantidis K, Denti MA, Tzortzakaki S, Marinou E, Tabler M, Tsagris M. (2007) Virp1 is a host protein with a major role in Potato spindle tuber viroid infection in Nicotiana plants. J Virol. 81:12872-12880.
[Abstract]

Kapetaniou EG, Kotsifaki D, Providaki M, Rina M, Bouriotis V, Kokkinidis M. (2007) Purification, crystallization and preliminary X-ray analysis of the BseCI DNA methyltransferase from Bacillus stearothermophilus in complex with its cognate DNA. Acta Crystallogr Sect F Struct Biol Cryst Commun. 63:12-14.
[Abstract]

Karamanou S, Gouridis G, Papanikou E, Sianidis G, Gelis I, Keramisanou D, Vrontou E, Kalodimos CG, Economou A.  (2007) Preprotein-controlled catalysis in the helicase motor of SecA. EMBO J. 26:2904-2914.
[Abstract] See also relevant Faculty of 1000 comment

Karvounaris SA, Sidiropoulos PI, Papadakis JA, Spanakis EK, Bertsias GK, Kritikos HD, Ganotakis ES, Boumpas DT. (2007) Metabolic syndrome is common among middle-to-older aged Mediterranean patients with rheumatoid arthritis and correlates with disease activity: a retrospective, cross-sectional, controlled, study. Ann Rheum Dis. 66:28-33.
[Abstract]

Koscianska E, Baev V, Skreka K, Oikonomaki K, Rusinov V, Tabler M, Kalantidis K. (2007) Prediction and preliminary validation of oncogene regulation by miRNAs. BMC Mol Biol. 8:79.
[Abstract]

Koukos G, Chroni A, Duka A, Kardassis D, Zannis VI. (2007) LCAT can rescue the abnormal phenotype produced by the natural ApoA-I mutations (Leu141Arg) Pisa and (Leu159Arg)(FIN). Biochemistry. 46:10713-10721.
[Abstract]

Koukos G, Chroni A, Duka A, Kardassis D, Zannis VI. (2007) Naturally occurring and bioengineered apoA-I mutations that inhibit the conversion of discoidal to spherical HDL: the abnormal HDL phenotypes can be corrected by treatment with LCAT. Biochem J. 406:167-174.
[Abstract]

Kourtis N, Tavernarakis N. (2007) Non - developmentally programmed cell death in Caenorhabditis elegans. Semin Cancer Biol. 17:122-133.
[Abstract]

Lagos D, Koukidou M, Savakis C, Komitopoulou K. (2007) The transformer gene in Bactrocera oleae: the genetic switch that determines its sex fate. Insect Mol Biol. 16:221-230.
[Abstract]

Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Emmert D, Hammond M, Hill CA, Kennedy RC, Lobo NF, MacCallum MR, Madey G, Megy K, Redmond S, Russo S, Severson DW, Stinson EO, Topalis P, Zdobnov EM, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH. (2007) VectorBase: a home for invertebrate vectors of human pathogens. Nucleic Acids Res. 35:D503-505.
[Abstract]

Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. (2007) The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 36: D475-479.
[Abstract]

Lo N, Paraskevopoulos C, Bourtzis K, O'Neill SL, Werren JH, Bordenstein SR, Bandi C. (2007) Taxonomic status of the intracellular bacterium Wolbachia pipientis. Int J Syst Evol Microbiol. 57:654-657.
[Abstract]

Maiuri MC, Le Toumelin G, Criollo A, Rain JC, Gautier F, Juin P, Tasdemir E, Pierron G, Troulinaki K, Tavernarakis N, Hickman JA, Geneste O, Kroemer G. (2007) Functional and physical interaction between Bcl-X(L) and a BH3-like domain in Beclin-1. EMBO J. 26:2527-2539.
[Abstract]

Markaki M, Drabek D, Livadaras I, Craig RK, Grosveld F, Savakis C. (2007) Stable expression of human growth hormone over 50 generations in transgenic insect larvae. Transgenic Res. 16:99-107.
[Abstract]

Meramveliotaki C, Kotsifaki D, Androulaki M, Hountas A, Eliopoulos E, Kokkinidis M. (2007) Purification, crystallization, X-ray diffraction analysis and phasing of an engineered single-chain PvuII restriction endonuclease. Acta Crystallogr Sect F Struct Biol Cryst Commun. 63:836-838.
[Abstract]

Meyer H, Garofalakis A, Zacharakis G, Psycharakis S, Mamalaki C, Kioussis D, Economou EN, Ntziachristos V, Ripoll J. (2007) Noncontact optical imaging in mice with full angular coverage and automatic surface extraction. Appl Opt. 46:3617-3627.
[Abstract]

Morikis D, Rizos AK, Spandidos DA, Krambovitis E. (2007) Electrostatic modeling of peptides derived from the V3-loop of HIV-1 gp120: Implications of the interaction with chemokine receptor CCR5. Int J Mol Med. 19:343-351.
[Abstract]

Neonakis IK, Gitti Z, Baritaki M, Kourbeti IS, Baritaki S, Petinaki E, Maraki S, Krambovitis E, Spandidos DA. (2007) Resistance status of Mycobacterium tuberculosis on the island of Crete, Greece. Eur J Clin Microbiol Infect Dis. 26:607-609.
[Abstract]

Neonakis IK, Gitti Z, Kourbeti IS, Michelaki H, Baritaki M, Alevraki G, Papadomanolaki E, Tsafaraki E, Tsouri A, Baritaki S, Krambovitis E, Spandidos DA. (2007) Mycobacterial species diversity at a general hospital on the island of Crete: First detection of Mycobacterium lentiflavum in Greece. Scand J Infect Dis. 39:875-879.
[Abstract]

Palaiomylitou M, Tartas A, Vlachakis D, Tzamarias D, Vlassi M. (2007) Investigating the structural stability of the Tup1-interaction domain of Ssn6: evidence for a conformational change on the complex. Proteins. 70:72-82.
[Abstract]

Papadaki C, Alexiou M, Cecena G, Verykokakis M, Bilitou A, Cross JC, Oshima RG, Mavrothalassitis G. (2007) Transcriptional repressor erf determines extraembryonic ectoderm differentiation. Mol Cell Biol. 27:5201-5213.
[Abstract]

Papanikolau Y, Papadovasilaki M, Ravelli RB, McCarthy AA, Cusack S, Economou A, Petratos K. (2007) Structure of dimeric SecA, the Escherichia coli preprotein translocase motor. J Mol Biol. 366:1545-1557.
[Abstract]

Papanikou E, Karamanou S, Economou A. (2007) Bacterial protein secretion through the translocase nanomachine. Nat Rev Microbiol. 5:839-851.
[Abstract]

Passam AM, Sourvinos G, Krambovitis E, Miyakis S, Stavrianeas N, Zagoreos I, Spandidos DA. (2007) Polymorphisms of Cx(3)CR1 and CXCR6 receptors in relation to HAART therapy of HIV type 1 patients. AIDS Res Hum Retroviruses. 23:1026-1032.
[Abstract]

Pastore A, Martin SR, Politou AS, Stemmler T, Temussi PA (2007) Unbiased cold denaturation: low and high temperature unfolding of yeast frataxin under physiological conditions. J Am Chem Soc. 129:5474-5475.
[Abstract]

Pissadaki EK, Poirazi P. (2007) Modulation of excitability in CA1 pyramidal neurons via the interplay of entorhinal cortex and CA3 inputs. Neurocomputing. 70:1735-1740.
[Abstract]

Poirazi P, Leroy F, Georgalaki MD, Aktypis A, De Vuyst L, Tsakalidou E. (2007) Use of artificial neural networks and a gamma-concept-based approach to model growth of and bacteriocin production by Streptococcus macedonicus ACA-DC 198 under simulated conditions of Kasseri cheese production. Appl Environ Microbiol. 73:768-776.
[Abstract]

Porichis F, Vlata Z, Hatzidakis G, Spandidos D, Krambovitis E. (2007) HIV-1 gp120/V3-derived epitopes promote activation-induced cell death to superantigen-stimulated CD4(+)/CD45RO(+) T cells. Immunol Lett. 108:97-102.
[Abstract]

Prokova V, Mavridou S, Papakosta P, Petratos K, Kardassis D., (2007) Novel mutations in Smad proteins that inhibit signaling by the transforming growth factor beta in mammalian cells. Biochemistry. 46:13775-13786.
[Abstract]

Psifogeorgou K, Papakosta P, Russo SJ, Neve RL, Kardassis D, Gold SJ, Zachariou V. (2007) RGS9-2 is a negative modulator of mu-opioid receptor function. J Neurochem. 103:617-625.
[Abstract]

Rizos AK, Baritaki S, Tsikalas I, Doetschman DC, Spandidos DA, Krambovitis E. (2007) Biophysical characterization of V3-lipopeptide liposomes influencing HIV-1 infectivity. Biochem Biophys Res Commun. 355:963-969.
[Abstract]

Shenkman L, Koukaki M, Karamanou S, Economou A. (2007) The P. CEZANNE Project: innovative approaches to continuous glucose Monitoring. Conf Proc IEEE Eng Med Biol Soc. 2007:6061-6064.
[Abstract]

Sideris DP, Tokatlidis K. (2007) Oxidative folding of small Tims mediated by site-specific docking onto Mia40 in the mitochondrial intermembrane space. Mol Microbiol. 65:1360-1373.
[Abstract]

Stanulovic VS, Kyrmizi I, Kruithof-de Julio M, Hoogenkamp M, Vermeulen JL, Ruijter JM, Talianidis I, Hakvoort TB, Lamers WH. (2007) Hepatic HNF4 alpha deficiency induces periportal expression of glutamine synthetase and other pericentral enzymes. Hepatology. 45:433-444.
[Abstract]

Stavroulaki M, Kardassis D, Chatzaki E, Sakellaris G, Lindschau C, Haller H, Tosca A, Krasagakis K. (2007) Exposure of normal human melanocytes to a tumor promoting phorbol ester reverses growth suppression by transforming growth factor beta. J Cell Physiol. 214:363-370.
[Abstract]

Stefan A, Tabler M, Hochkoeppler A. (2007) Efficient silencing of the gene coding for the epsilon subunit of DNA polymerase III in Escherichia coli is triggered by antisense RNAs featuring stability in vivo. FEMS Microbiol Lett. 270:277-283.
[Abstract]

Syntichaki P, Troulinaki K, Tavernarakis N. (2007) Protein  synthesis is a novel determinant of aging in Caenorhabditis elegans. Ann N Y Acad Sci. 1119:289-295.
[Abstract]

Syntichaki P, Troulinaki K, Tavernarakis N. (2007) elF4E function in somatic cells modulates ageing in Caenorhabditis elegans. Nature.  445:922-926.
[Abstract] See also the Editor's summary in Nature and this commentary in JCB

Tavernarakis N. (2007) Protein synthesis and aging: eIF4E and the soma vs. germline distinction. Cell Cycle. 6:1168-1171.
[Abstract]

Tavernarakis N. (2007) Editorial: diseases of the brain--neuronal function and dysfunction. Biotechnol J. 2:518-519.
[Abstract]

Tavernarakis N. (2007) Cardiomyocyte necrosis: alternative mechanisms, effective interventions. Biochim Biophys Acta. 1773:480-482.
[Abstract]

Thymiakou E, Zannis VI, Kardassis D. (2007) Physical and functional interactions between liver X receptor/retinoid X receptor and Sp1 modulate the transcriptional induction of the human ATP binding cassette transporter A1 gene by oxysterols and retinoids. Biochemistry. 46:11473-11483.
[Abstract]

Tirard M, Almeida OF, Hutzler P, Melchior F, Michaelidis TM. (2007) Sumoylation and proteasomal activity determine the transactivation properties of the mineralocorticoid receptor. Mol Cell Endocrinol. 268:20-29.
[Abstract]

Tsibidis GD, Tavernarakis N. (2007) Nemo: a computational tool for analyzing nematode locomotion. BMC Neurosci. 8:86.
[Abstract]

Tzimourakas A, Giasemi S, Mouratidou M, Karagogeos D. (2007) Structure-function analysis of protein complexes involved in the molecular architecture of juxtaparanodal regions of myelinated fibers. Biotechnol J. 2:577-583.
[Abstract]

Vergnolle MA, Alcock FH, Petrakis N, Tokatlidis K. (2007) Mutation of conserved charged residues in mitochondrial TIM10 subunits precludes TIM10 complex assembly, but does not abolish growth of yeast cells. J Mol Biol. 371:1315-1324.
[Abstract]

Ververidis F, Trantas E, Douglas C, Vollmer G, Kretzschmar G, Panopoulos N. (2007) Biotechnology of flavonoids and other phenylpropanoid-derived natural products. Part II: Reconstruction of multienzyme pathways in plants and microbes. Biotechnol J. 2:1235-1249.
[Abstract]

Ververidis F, Trantas E, Douglas C, Vollmer G, Kretzschmar G, Panopoulos N. (2007) Biotechnology of flavonoids and other phenylpropanoid-derived natural products. Part I: Chemical diversity, impacts on plant biology and human health. Biotechnol J. 2:1214-1234.
[Abstract]

Verykokakis M, Papadaki C, Vorgia E, Le Gallic L, Mavrothalassitis G. (2007) The RAS-dependent ERF control of cell proliferation and differentiation is mediated by c-Myc repression. J Biol Chem. 282:30285-30294.
[Abstract]

Vontas J, David JP, Nikou D, Hemingway J, Christophides GK, Louis C, Ranson H. (2007) Transcriptional analysis of insecticide resistance in Anopheles stephensi using cross-species microarray hybridization. Insect Mol Biol. 16:315-324.
[Abstract]

Wang E, Koutsioulis D, Leiros H, Ole A, Bouriotis V, Hough E, Heikinheimo P. (2007) Crystal structure of alkaline phosphatase from the Antarctic bacterium TAB5. J Mol Biol. 366:1318-1331.
[Abstract]

Wong D, Bazopoulou D, Pujol N, Tavernarakis N, Ewbank JJ. (2007) Genome-wide investigation reveals pathogen-specific and shared signatures in the response of C. elegans to infection. Genome Biol. 8:R194.
[Abstract]

Zacharioudakis I, Gligoris T, Tzamarias D. (2007) A yeast catabolic enzyme controls transcriptional memory. Curr Biol. 17:2041-2046.
[Abstract] See relevant dispatch by M Ptashne