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2015 (73 papers)

Palikaras K, Lionaki E, Tavernarakis N. (2015) Mitophagy: In sickness and in health. Mol Cell Oncol. 3:e1056332.
[Abstract]
Doxaki C, Kampranis SC, Eliopoulos AG, Spilianakis C, Tsatsanis C. (2015) Coordinated Regulation of miR-155 and miR-146a Genes during Induction of Endotoxin Tolerance in Macrophages. J Immunol. 195:5750-5761.
[Abstract]
Bastakis GG, Savvaki M, Stamatakis A, Vidaki M, Karagogeos D. (2015) Tag1 deficiency results in olfactory dysfunction through impaired migration of mitral cells. Development. 142:4318-4328.
[Abstract]
Halon E, Eakteiman G, Moshitzky P, Elbaz M, Alon M, Pavlidi N, Vontas J, Morin S. (2015) Only a minority of broad-range detoxification genes respond to a variety of phytotoxins in generalist Bemisia tabaci species. Sci Rep. 5:17975.
[Abstract]
AlSuhaibani E, Voudouris CC, Al-Atiyat R, Kotzamumin A, Vontas J, Margaritopoulos JT. (2015) Identification of a point mutation in the ace1 gene of Therioaphis trifolli maculata and detection of insecticide resistance by a diagnostic PCR-RFLP assay. Bull Entomol Res. 105:712-716.
[Abstract]
Roman C, Fuior EV, Trusca VG, Kardassis D, Simionescu M, Gafencu AV. (2015) Thyroid hormones upregulate apolipoprotein E gene expression in astrocytes. Biochem Biophys Res Commun. 468:190-195.
[Abstract]
Stavri S, Simionescu M, Kardassis D, Gafencu AV. (2015) Krüppel-like factor 4 synergizes with CREB to increase the activity of apolipoprotein E gene promoter in macrophages. Biochem Biophys Res Commun. 468:66-72.
[Abstract]
Gessmann R, Brückner H, Petratos K (2015) The first N-terminal unprotected (Gly-Aib)n peptide: H-Gly-Aib-Gly-Aib-OtBu. Acta Crystallogr. 71:1114-1117.
[Abstract]
Papadovasilaki M, Oberthür D, Gessmann R, Sarrou I, Betzel C, Scoulica E, Petratos K. (2015) Biophysical and enzymatic properties of aminoglycoside adenylyltransferase AadA6 from Pseudomonas aeruginosa. Biochem. Biophys. Rep. 4:152-157.
[Abstract]
Petrantonakis PC, Poirazi P. (2015) A Simple Method to Simultaneously Detect and Identify Spikes from Raw Extracellular Recordings. Front Neurosci. 9:452.
[Abstract]
Efstathopoulos P, Kourgiantaki A, Karali K, Sidiropoulou K, Margioris AN, Gravanis A, Charalampopoulos I. (2015) Fingolimod induces neurogenesis in adult mouse hippocampus and improves contextual fear memory. Transl Psychiatry. 5:e685.
[Abstract]
Ilias A, Lagnel J, Kapantaidaki DE, Roditakis E, Tsigenopoulos CS, Vontas J, Tsagkarakou A. (2015) Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype. BMC Genomics. 16:939.
[Abstract]
Verigos J, Magklara A. (2015) Revealing the Complexity of Breast Cancer by Next Generation Sequencing. Cancers (Basel). 7:2183-2200.
Chen XG, Jiang X, Gu J, Xu M, Wu Y, Deng Y, Zhang C, Bonizzoni M, Dermauw W, Vontas J, Armbruster P, Huang X, Yang Y, Zhang H, He W, Peng H, Liu Y, Wu K, Chen J, Lirakis M, Topalis P, Van Leeuwen T, Hall AB, Jiang X, Thorpe C, Mueller RL, Sun C, Waterhouse RM, Yan G, Tu ZJ, Fang X, James AA. (2015) Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proc Natl Acad Sci U S A. 112:E5907-5915.
[Abstract]
Lionaki E, Markaki M, Palikaras K, Tavernarakis N. (2015) Mitochondria, autophagy and age-associated neurodegenerative diseases: New insights into a complex interplay. Biochim Biophys Acta. 1847:1412-1423.
[Abstract]
Tiniakou I, Kanaki Z, Georgopoulos S, Chroni A, Van Eck M, Fotakis P, Zannis VI, Kardassis D. (2015) Natural human apoA-I mutations L141RPisa and L159RFIN alter HDL structure and functionality and promote atherosclerosis development in mice. Atherosclerosis. 243:77-85.
[Abstract]
Hadjimichael C, Chanoumidou K, Papadopoulou N, Arampatzi P, Papamatheakis J, Kretsovali A. (2015) Common stemness regulators of embryonic and cancer stem cells. World J Stem Cells. 7:1150-1184.
[Abstract]
Jones CM, Papanicolaou A, Mironidis GK, Vontas J, Yang Y, Lim KS, Oakeshott JG, Bass C, Chapman JW. (2015) Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest. Mol Ecol. 24:4901-4911.
[Abstract]
Riga M, Myridakis A, Tsakireli D, Morou E, Stephanou EG, Nauen R, Van Leeuwen T, Douris V, Vontas J. (2015) Functional characterization of the Tetranychus urticae CYP392A11, a cytochrome P450 that hydroxylates the METI acaricides cyenopyrafen and fenpyroximate0. Insect Biochem Mol Biol. 65:91-99.
[Abstract]
Athanasiou LS, Rigas GA, Sakellarios AI, Exarchos TP, Siogkas PK, Naka KK, Panetta D, Pelosi G, Vozzi F, Michalis LK, Parodi O, Fotiadis DI. (2015) Computerized methodology for micro-CT and histological data inflation using an IVUS based translation map. Comput Biol Med. 65:168-176.
[Abstract]
Athanasiou LS, Rigas G, Sakellarios A, Bourantas CV, Stefanou K, Fotiou E, Exarchos TP, Siogkas P, Naka KK, Parodi O, Vozzi F, Teng Z, Young VE, Gillard JH, Prati F, Michalis LK, Fotiadis DI. (2015) Error propagation in the characterization of atheromatic plaque types based on imaging. Comput Methods Programs Biomed. 121:161-174.
[Abstract]
Mansfield ML, Tsortos A, Douglas JF. (2015) Persistent draining crossover in DNA and other semi-flexible polymers: Evidence from hydrodynamic models and extensive measurements on DNA solutions. J Chem Phys. 143:124903.
[Abstract]
Charmpilas N, Daskalaki I, Papandreou ME, Tavernarakis N. (2015) Protein synthesis as an integral quality control mechanism during ageing. Ageing Res Rev. 23:75-89.
[Abstract]
Gkolfinopoulou C, Stratikos E, Theofilatos D, Kardassis D, Voulgari PV, Drosos AA, Chroni A. (2015) Impaired Antiatherogenic Functions of High-density Lipoprotein in Patients with Ankylosing Spondylitis. J Rheumatol. 42:1652-1660.
[Abstract]
Tivodar S, Kalemaki K, Kounoupa Z, Vidaki M, Theodorakis K, Denaxa M, Kessaris N, de Curtis I, Pachnis V, Karagogeos D. (2015) Rac-GTPases Regulate Microtubule Stability and Axon Growth of Cortical GABAergic Interneurons. Cereb Cortex. 25:2370-2382.
[Abstract]
Papadakis G, Skandalis N, Dimopoulou A, Glynos P, Gizeli E. (2015) Bacteria Murmur: Application of an Acoustic Biosensor for Plant Pathogen Detection. PLoS One. 10:e0132773.
[Abstract]
Pinatel D, Hivert B, Boucraut J, Saint-Martin M, Rogemond V, Zoupi L, Karagogeos D, Honnorat J, Faivre-Sarrailh C. (2015) Inhibitory axons are targeted in hippocampal cell culture by anti-Caspr2 autoantibodies associated with limbic encephalitis. Front Cell Neurosci. 9:265.
[Abstract]
Tsortos A, Grammoustianou A, Lymbouridou R, Papadakis G, Gizeli E. (2015) The detection of multiple DNA targets with a single probe using a conformation-sensitive acoustic sensor. Chem Commun (Camb). 51:11504-11507.
[Abstract]
Kastriti ME, Sargiannidou I, Kleopa KA, Karagogeos D. (2015) Differential modulation of the juxtaparanodal complex in Multiple Sclerosis. Mol Cell Neurosci. 67:93-103.
[Abstract]
Kitsiouli E, Antoniou G, Gotzou H, Karagiannopoulos M, Basagiannis D, Christoforidis S, Nakos G, Lekka ME. (2015) Effect of azithromycin on the LPS-induced production and secretion of phospholipase A2 in lung cells. Biochim Biophys Acta. 1852:1288-1297.
[Abstract]
Nauen R, Wölfel K, Lueke B, Myridakis A, Tsakireli D, Roditakis E, Tsagkarakou A, Stephanou E, Vontas J. (2015) Development of a lateral flow test to detect metabolic resistance in Bemisia tabaci mediated by CYP6CM1, a cytochrome P450 with broad spectrum catalytic efficiency. Pestic Biochem Physiol. 121:3-11.
[Abstract]
Pavlidi N, Tseliou V, Riga M, Nauen R, Van Leeuwen T, Labrou NE, Vontas J. (2015) Functional characterization of glutathione S-transferases associated with insecticide resistance in Tetranychus urticae. Pestic Biochem Physiol. 121:53-60.
[Abstract]
Gessmann R, Brückner H, Aivaliotis M, Petratos K. (2015) The crystal structure of Z-Gly-Aib-Gly-Aib-OtBu. J Pept Sci. 21:476-479.
[Abstract]
Fotakis P, Kuivenhoven JA, Dafnis E, Kardassis D, Zannis VI. (2015) The Effect of Natural LCAT Mutations on the Biogenesis of HDL. Biochemistry. 54:3348-3359.
[Abstract]
Andreadaki M, Mollenkopf HJ, Nika F, Brady D, Tewari R, Matuschewski K, Siden-Kiamos I. (2015) Global expression profiling reveals shared and distinct transcript signatures in arrested act2(-) and CDPK4(-) Plasmodium berghei gametocytes. Mol Biochem Parasitol. 201:100-107.
[Abstract]
Mari M, Filippidis G, Palikaras K, Petanidou B, Fotakis C, Tavernarakis N. (2015) Imaging ectopic fat deposition in caenorhabditis elegans muscles using nonlinear microscopy. Microsc Res Tech. 78:523-528.
[Abstract]
De Waelheyns E, Segers K, Sardis MF, Anné J, Nicolaes GA, Economou A. (2015) Identification of small-molecule inhibitors against SecA by structure-based virtual ligand screening. J Antibiot (Tokyo). 68:666-73.
[Abstract]
Arnaouteli S, Giastas P, Andreou A, Tzanodaskalaki M, Aldridge C, Tzartos SJ, Vollmer W, Eliopoulos E, Bouriotis V. (2015) Two Putative Polysaccharide Deacetylases Are Required for Osmotic Stability and Cell Shape Maintenance in Bacillus anthracis.. J Biol Chem. 290:13465-13478.
[Abstract]
Grigoraki L, Lagnel J, Kioulos I, Kampouraki A, Morou E, Labbé P, Weill M, Vontas J. (2015) Transcriptome Profiling and Genetic Study Reveal Amplified Carboxylesterase Genes Implicated in Temephos Resistance, in the Asian Tiger Mosquito Aedes albopictus. PLoS Negl Trop Dis. 9:e0003771.
[Abstract]
Pundhir S, Poirazi P, Gorodkin J. (2015) Emerging applications of read profiles towards the functional annotation of the genome. Front Genet. 6:188.
[Abstract]
Tiniakou I, Drakos E, Sinatkas V, Van Eck M, Zannis VI, Boumpas D, Verginis P, Kardassis D. (2015) High-Density Lipoprotein Attenuates Th1 and Th17 Autoimmune Responses by Modulating Dendritic Cell Maturation and Function. J Immunol. 194:4676-4687.
[Abstract]
Tsolis KC, Bei ES, Papathanasiou I, Kostopoulou F, Gkretsi V, Kalantzaki K, Malizos K, Zervakis M, Tsezou A, Economou A. (2015) Comparative proteomic analysis of hypertrophic chondrocytes in osteoarthritis. Clin Proteomics. 12:12.
[Abstract]
Karathanasis N, Tsamardinos I, Poirazi P. (2015) MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology. PLoS One. 10:e0126151.
[Abstract]
Joëls M, Hoogenraad CC, Poirazi P, Di Luca M. (2015) The Hitchhiker's Guide to a Neuroscience Career. Neuron. 86:613-616.
[Abstract]
Kyriakakis E, Princz A, Tavernarakis N. (2015) Stress responses during ageing: molecular pathways regulating protein homeostasis. Methods Mol Biol. 1292:215-234.
[Abstract]
Niso-Santano M, Bravo-San Pedro JM, Maiuri MC, Tavernarakis N, Cecconi F, Madeo F, Codogno P, Galluzzi L, Kroemer G. (2015) Novel inducers of BECN1-independent autophagy: cis-unsaturated fatty acids. Autophagy. 11:575-577.
[Abstract]
Palikaras K, Lionaki E, Tavernarakis N. (2015) Coordination of mitophagy and mitochondrial biogenesis during ageing in C. elegans. Nature. 521:525-528.
[Abstract]
Papadaki A, Politou AS, Smirlis D, Kotini MP, Kourou K, Papamarcaki T, Boleti H. (2015) The Leishmania donovani histidine acid ecto-phosphatase LdMAcP: insight into its structure and function. Biochem J. 467:473-486.
[Abstract]
Yang J, AlTahan AM, Hu D, Wang Y, Cheng PH, Morton CL, Qu C, Nathwani AC, Shohet JM, Fotsis T, Koster J, Versteeg R, Okada H, Harris AL, Davidoff AM. (2015) The role of histone demethylase KDM4B in Myc signaling in neuroblastoma. J Natl Cancer Inst. 107:djv080.
[Abstract]
Thawer NG, Ngondi JM, Mugalura FE, Emmanuel I, Mwalimu CD, Morou E, Vontas J, Protopopoff N, Rowland M, Mutagahywa J, Lalji S, Molteni F, Ramsan MM, Willilo R, Wright A, Kafuko JM, Ndong I, Reithinger R, Magesa SM. (2015) Use of insecticide quantification kits to investigate the quality of spraying and decay rate of bendiocarb on different wall surfaces in Kagera region, Tanzania. Parasit Vectors. 8:242.
[Abstract]
Niso-Santano M, Malik SA, Pietrocola F, Bravo-San Pedro JM, Mariño G, Cianfanelli V, Ben-Younès A, Troncoso R, Markaki M, Sica V, Izzo V, Chaba K, Bauvy C, Dupont N, Kepp O, Rockenfeller P, Wolinski H, Madeo F, Lavandero S, Codogno P, Harper F, Pierron G, Tavernarakis N, Cecconi F, Maiuri MC, Galluzzi L, Kroemer G. (2015) Unsaturated fatty acids induce non-canonical autophagy. EMBO J. 34:1025-1041.
[Abstract]
Cutsuridis V, Poirazi P. (2015) A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop. Neurobiol Learn Mem. 120:69-83.
[Abrstract]
Tsiavos T, Ioannidis NE, Tsortos A, Gizeli E, Kotzabasis K. (2015) Spermine is a potent modulator of proton transport through LHCII. J Plant Physiol. 177:44-50.
[Abstract]
Stratigi K, Kapsetaki M, Aivaliotis M, Town T, Flavell RA, Spilianakis CG. (2015) Spatial proximity of homologous alleles and long noncoding RNAs regulate a switch in allelic gene expression. Proc Natl Acad Sci U S A. 112:E1577-86.
[Abstract]
Tampaki Z, Mwakubambanya RS, Goulielmaki E, Kaforou S, Kim K, Waters AP, Carruthers VB, Siden-Kiamos I, Loukeris TG, Koussis K. (2015) Ectopic Expression of a Neospora caninum Kazal Type Inhibitor Triggers Developmental Defects in Toxoplasma and Plasmodium. PLoS One. 10:e0121379.
[Abrstract]
Charlton JJ, Tsoukatou D, Mamalaki C, Chatzidakis I. (2015) Programmed death 1 regulates memory phenotype CD4 T cell accumulation, inhibits expansion of the effector memory phenotype subset and modulates production of effector cytokines. PLoS One. 10:e0119200.
[Abstract]
Kiparaki M, Zarifi I, Delidakis C. (2015) bHLH proteins involved in Drosophila neurogenesis are mutually regulated at the level of stability. Nucleic Acids Res. 43:2543-2559.
[Abstract]
Nikoletopoulou V, Papandreou ME, Tavernarakis N. (2015) Autophagy in the physiology and pathology of the central nervous system. Cell Death Differ. 22:398-407.
[Abstract]
Exarchos KP, Carpegianni C, Rigas G, Exarchos TP, Vozzi F, Sakellarios A, Marraccini P, Naka K, Michalis L, Parodi O, Fotiadis DI. (2015) A multiscale approach for modeling atherosclerosis progression. IEEE J Biomed Health Inform. 19:709-19.
[Abstract]
Olivieri A, Bertuccini L, Deligianni E, Franke-Fayard B, Currà C, Siden-Kiamos I, Hanssen E, Grasso F, Superti F, Pace T, Fratini F, Janse CJ, Ponzi M. (2015) Distinct properties of the egress-related osmiophilic bodies in male and female gametocytes of the rodent malaria parasite Plasmodium berghei. Cell Microbiol. 17:355-368.
[Abstract]
Rückert C, Albersmeier A, Busche T, Jaenicke S, Winkler A, Friðjónsson ÓH, Hreggviðsson GÓ, Lambert C, Badcock D, Bernaerts K, Anne J, Economou A, Kalinowski J. (2015) Complete genome sequence of Streptomyces lividans TK24. J Biotechnol. 199:21-22.
[Abstract]
Mitraka E, Topalis P, Dritsou V, Dialynas E, Louis C. (2015) Describing the breakbone fever: IDODEN, an ontology for dengue fever. PLoS Negl Trop Dis. 9:e0003479.
[Abstract]
Chondrogianni N, Georgila K, Kourtis N, Tavernarakis N, Gonos ES. (2015) 20S proteasome activation promotes life span extension and resistance to proteotoxicity in Caenorhabditis elegans. FASEB J. 29:611-622.
[Abstract]
Hliscs M, Millet C, Dixon MW, Siden-Kiamos I, McMillan P, Tilley L (2015) Organization and function of an actin cytoskeleton in Plasmodium falciparum gametocytes. Cell Microbiol. 17:207-225.
[Abstract]
Petrantonakis PC, Poirazi P. (2015) Dentate Gyrus circuitry features improve performance of sparse approximation algorithms. PLoS One. 10:e0117023.
[Abstract]
Gazi AD, Charova S, Aivaliotis M, Panopoulos NJ, Kokkinidis M. (2015) HrpG and HrpV proteins from the Type III secretion system of Erwinia amylovora form a stable heterodimer. FEMS Microbiol Lett. 362:1-8.
[Abstract]
Gessmann R, Papadovasilaki M, Drougkas E, Petratos K. (2015) Zinc-substituted pseudoazurin solved by S/Zn-SAD phasing. Acta Crystallogr F Struct Biol Commun. 71:19-23.
[Abstract]
Gkeka P, Papafotika A, Christoforidis S, Cournia Z. (2015) Exploring a non-ATP pocket for potential allosteric modulation of PI3Kα. J Phys Chem B. 119:1002-1016.
[Abstract]
Kastellakis G, Cai DJ, Mednick SC, Silva AJ, Poirazi P. (2015) Synaptic clustering within dendrites: An emerging theory of memory formation. Prog Neurobiol. 126:19-35.
[Abrstract]
Giraldo-Calderón GI, Emrich SJ, MacCallum RM, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S; VectorBase Consortium, Madey G, Collins FH, Lawson D. (2015) VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic Acids Res. 43:D707-713.
[Abstract]
Scaramuzzino C, Casci I, Parodi S, Lievens PM, Polanco MJ, Milioto C, Chivet M, Monaghan J, Mishra A, Badders N, Aggarwal T, Grunseich C, Sambataro F, Basso M, Fackelmayer FO, Taylor JP, Pandey UB, Pennuto M. (2015) Protein arginine methyltransferase 6 enhances polyglutamine-expanded androgen receptor function and toxicity in spinal and bulbar muscular atrophy. Neuron. 85:88-100.
[Abstract]
Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, Brockman AI, Burkot TR, Burt A, Chan CS, Chauve C, Chiu JC, Christensen M, Costantini C, Davidson VL, Deligianni E, Dottorini T, Dritsou V, Gabriel SB, Guelbeogo WM, Hall AB, Han MV, Hlaing T, Hughes DS, Jenkins AM, Jiang X, Jungreis I, Kakani EG, Kamali M, Kemppainen P, Kennedy RC, Kirmitzoglou IK, Koekemoer LL, Laban N, Langridge N, Lawniczak MK, Lirakis M, Lobo NF, Lowy E, MacCallum RM, Mao C, Maslen G, Mbogo C, McCarthy J, Michel K, Mitchell SN, Moore W, Murphy KA, Naumenko AN, Nolan T, Novoa EM, O'Loughlin S, Oringanje C, Oshaghi MA, Pakpour N, Papathanos PA, Peery AN, Povelones M, Prakash A, Price DP, Rajaraman A, Reimer LJ, Rinker DC, Rokas A, Russell TL, Sagnon N, Sharakhova MV, Shea T, Simão FA, Simard F, Slotman MA, Somboon P, Stegniy V, Struchiner CJ, Thomas GW, Tojo M, Topalis P, Tubio JM, Unger MF, Vontas J, Walton C, Wilding CS, Willis JH, Wu YC, Yan G, Zdobnov EM, Zhou X, Catteruccia F, Christophides GK, Collins FH, Cornman RS, Crisanti A, Donnelly MJ, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Hansen IA, Howell PI, Kafatos FC, Kellis M, Lawson D, Louis C, Luckhart S, Muskavitch MA, Ribeiro JM, Riehle MA, Sharakhov IV, Tu Z, Zwiebel LJ, Besansky NJ. (2015) Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science. 347:1258522.
[Abstract]
Akay M, Fotiadis DI, Nikita KS, Williams RW. (2015) Guest-editorial: Biomedical informatics in clinical environments. IEEE J Biomed Health Inform. 19:149-150.
[Abstract]
Siogkas PK, Papafaklis MI, Sakellarios AI, Stefanou KA, Bourantas CV, Athanasiou LS, Exarchos TP, Naka KK, Michalis LK, Parodi O, Fotiadis DI. (2015) Patient-specific simulation of coronary artery pressure measurements: an in vivo three-dimensional validation study in humans. Biomed Res Int. 2015:628416.
[Abstract]
Panetta D, Pelosi G, Viglione F, Kusmic C, Terreni M, Belcari N, Guerra AD, Athanasiou L, Exarchos T, Fotiadis DI, Filipovic N, Trivella MG, Salvadori PA, Parodi O. (2015) Quantitative micro-CT based coronary artery profiling using interactive local thresholding and cylindrical coordinates. Technol Health Care. 23:557-70.
[Abstract]
Pediaditakis I, Iliopoulos I, Theologidis I, Delivanoglou N, Margioris AN, Charalampopoulos I, Gravanis A. (2015) Dehydroepiandrosterone: an ancestral ligand of neurotrophin receptors. Endocrinology. 156:16-23.
[Abstract]
Kardassis D, Gafencu A, Zannis VI, Davalos A. (2015) Regulation of HDL genes: transcriptional, posttranscriptional, and posttranslational. Handb Exp Pharmacol. 224:113-179.
[Abstract]

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