Publications
| 2009 |
Akoumianaki T, Kardassis D, Polioudaki H, Georgatos SD, Theodoropoulos PA. (2009) Nucleocytoplasmic shuttling of soluble tubulin in mammalian cells. J Cell Sci. 122:1111-8 Amsen D, Spilianakis CG, Flavell RA. (2009) How are T(H)1 and T(H)2 effector cells made? Curr Opin Immunol. 21:153-60 Andreou A. M. and Tavernarakis N. (2009) SUMOylation and cell signalling. Biotechnology Journal 4:1740-52 Artal-Sanz M. and Tavernarakis N. (2009) Prohibitin couples diapause signaling to mitochondrial energy metabolism during ageing in Caenorhabditis elegans. Nature 461:793-7 Artal-Sanz M. and Tavernarakis N. (2009) Prohibitin and mitochondrial biology. Trends in Endocrinology and Metabolism 20:394-401 Banci L., Bertini I., Cefaro C., Ciofi-Baffoni S., Gallo A., Martinelli M., Sideris DP, Katrakili N. and Tokatlidis K. (2009) MIA40 is an oxidoreductase catalyzing oxidative protein folding in mitochondria. Nature Structural and Molecular Biology 16:198-206 Banci L, Bertini I, Ciofi-Baffoni S, Tokatlidis K. (2009) The coiled coil-helix-coiled coil-helix proteins may be redox proteins. FEBS Lett. 583:1699-702 Bazopoulou D. and Tavernarakis N. (2009) The NemaGENETAG initiative: large scale transposon insertion gene-tagging in Caenorhabditis elegans. Genetica 137:39-46 Bender F., Roach P., Tsortos A., Papadakis G., Newton M.I., McHale G., Gizeli E. (2009) Development of a combined surface plasmon resonance/surface acoustic wave device for the characterization of biomolecules. Measurement Science & Technology 20:124011 Bertsias GK, Ioannidis JP, Boletis J, Bombardieri S, Cervera R, Dostal C, Font J, Gilboe IM, Houssiau F, Huizinga T, Isenberg D, Kallenberg CG, Khamashta M, Piette JC, Schneider M, Smolen J, Sturfelt G, Tincani A, van Vollenhoven R, Boumpas DT, Gordon C. (2009) EULAR points to consider for conducting clinical trials in systemic lupus erythematosus: literature based evidence for the selection of endpoints. Ann Rheum Dis. 68:477-83 Bertsias GK, Nakou M, Choulaki C, Raptopoulou A, Papadimitraki E, Goulielmos G, Kritikos H, Sidiropoulos P, Tzardi M, Kardassis D, Mamalaki C, Boumpas DT. (2009) Genetic, immunologic, and immunohistochemical analysis of the programmed death 1/programmed death ligand 1 pathway in human systemic lupus erythematosus. Arthritis Rheum. 60:207-18 Dali S, Boumpas DT. (2009) Fertility and rheumatic diseases. Journal of Reproductive Immunology 81:138-138 Danielle M. Liubicich, Julia M. Serano, Anastasios Pavlopoulos, Zacharias Kontarakis, Meredith E. Protas, Elaine Kwan, Sandip Chatterjee, Khoa D. Tran, Michalis Averof, and Nipam H. Patel. (2009) Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology. PNAS 106:13892-6 Derfuss T, Parikh K, Velhin S, Braun M, Mathey E, Krumbholz M, Kumpfel T, Moldenhauer A, Rader C, Sonderegger P, Pollmann W, Tiefenthaller C, Bauer J, Lassmann H, Wekerle H, Karagogeos D, Hohlfeld R, Linington C, Meinl E. (2009) Contactin-2/TAG-1-directed autoimmunity is identified in multiple sclerosis patients and mediates gray matter pathology in animals. Proc. Natl. Acad. Sci. USA 106:8302-7 Dialynas E, Topalis P, Vontas J, Louis C. (2009) MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors. PLoS Negl Trop Dis. 3:e465 Eisenberg T., Knauer H., Schauer A., Fussi H., Büttner S., Ruckenstuhl C., Carmona-Gutierrez D., Ring J., Schröder S., Antonacci L., Fahrenkrog B., Deszcz L., Hartl R., Magnes C., Sinner F., Schraml E., Criollo A., Megalou E., Weiskopf D., Laun P., Heeren G., Breitenbach M., Grubeck-Loebenstein B., Herker E., Fröhlich K.-U., Tavernarakis N., Minois N., Kroemer G. and Madeo F. (2009) Induction of autophagy by spermidine promotes longevity. Nature Cell Biology 11:1305-14 Fadouloglou VE, Stavrakoudis A, Bouriotis V, Kokkinidis M, Glykos NM. (2009) Molecular Dynamics Simulations of BcZBP, A Deacetylase from Bacillus cereus: Active Site Loops Determine Substrate Accessibility and Specificity. Journal of Chemical Theory and Computation 5:3299-11 Fadouloglou VE, Bastaki MN, Ashcroft AE, Phillips SE, Panopoulos NJ, Glykos NM, Kokkinidis M. (2009) On the quaternary association of the type III secretion system HrcQB-C protein: experimental evidence differentiates among the various oligomerization models. J Struct Biol. 166:214-25 Filippidis G., Gualda E. J., Mari M., Troulinaki K., Fotakis C. and Tavernarakis N. (2009) In vivo imaging of cell morphology and cellular processes in Caenorhabditis elegans, using non-linear phenomena. Micron, 40:876-80 Filippidis G., Troulinaki K., Fotakis C. and Tavernarakis N. (2009) In vivo polarization-dependant Second and Third harmonic generation imaging of Caenorhabditis elegans pharyngeal muscles. Laser Physics 19:1475-1479 Flouri I, Drosos A, Boki K, Skopouli F, Karras D, Papadopoulos I, Geborek P, Panagiotakis S, Boumpas DT, Sidiropoulos P. (2009) Geriatric rheumatoid arthritis patients on delayed anti-TF-alpha agents have higher disease activity and experience more often serious adverse events compared to younger adults. Clinical and Experimental Rheumatology 27:705-706 Galanakis PA, Kandias NG, Rizos AK, Morikis D, Krambovitis E, Spyroulias GA. (2009) NMR evidence of charge-dependent interaction between various PND V3 and CCR5 N-terminal peptides. Biopolymers 92:94-109 Garinis GA, Schumacher B. (2009) Transcription-blocking DNA damage in aging and longevity. Cell Cycle. 8:2134-5 Garinis GA , Uittenboogaard LM , Stachelscheid H , Fousteri M , van Ijcken W , Breit TM , van Steeg H , Mullenders LH , van der Horst GT , Bruning JC , Niessen CM , Hoeijmakers JH , Schumacher B. (2009) Persistent transcription-blocking DNA lesions trigger somatic growth attenuation associated with longevity. Nature Cell Biology 11:604-15 Gazi AD, Charova SN, Panopoulos NJ, Kokkinidis M. (2009) Coiled-coils in type III secretion systems: structural flexibility, disorder and biological implications. Cell Microbiol. 11:719-29 Gazouli M, Katsantoni E, Kosteas T, Anagnou NP. (2009) Persistent fetal gamma-globin expression in adult transgenic mice following deletion of two silencer elements located 3' to the human Agamma-globin gene. Mol Med. 15:415-24 Geel TM, Meiss G, van der Gun BT, Kroesen BJ, de Leij LF, Zaremba M, Silanskas A, Kokkinidis M, Pingoud A, Ruiters MH, McLaughlin PM, Rots MG. (2009) Endonucleases induced TRAIL-insensitive apoptosis in ovarian carcinoma cells. Exp Cell Res. 315:2487-95 Girgis SM, Bem FP, Dovas CI, Sclavounos A, Avgelis AD, Tsagris M, Katis N, Kyriakopoulou PE. (2009) Characterisation of a novel ilarvirus causing grapevine angular mosaic disease. European Journal Of Plant Pathology 125:203-11 Gordon C, Bertsias G, Ioannidis JP, Boletis J, Bombardieri S, Cervera R, Dostál C, Font J, Gilboe IM, Houssiau F, Huizinga TW, Isenberg D, Kallenberg CG, Khamashta MA, Piette JC, Schneider M, Smolen JS, Sturfelt G, Tincani A, Van Vollenhoven R, Boumpas DT. (2009) EULAR points to consider for conducting clinical trials in systemic lupus erythematosus. Ann Rheum Dis. 68:470-6 Gossec L, Dougados M, Rincheval N, Balanescu A, Boumpas DT, Canadelo S, Carmona L, Daurès JP, de Wit M, Dijkmans BA, Englbrecht M, Gunendi Z, Heiberg T, Kirwan JR, Mola EM, Matucci-Cerinic M, Otsa K, Schett G, Sokka T, Wells GA, Aanerud GJ, Celano A, Dudkin A, Hernandez C, Koutsogianni K, Akca FN, Petre AM, Richards P, Scholte-Voshaar M, Von Krause G, Kvien TK. (2009) Elaboration of the preliminary Rheumatoid Arthritis Impact of Disease (RAID) score: a EULAR initiative. Ann Rheum Dis. 68:1680-5 Gouridis, G., Karamanou, S., Gelis, I., Kalodimos, C.G. and Economou, A (2009) Signal peptides are allosteric activators of the protein translocase. Nature 462:363-7 Kardassis D, Murphy C, Fotsis T, Moustakas A, Stournaras C. (2009) Control of transforming growth factor beta signal transduction by small GTPases. FEBS J. 276:2947-65 Karvounaris S, Stagakis I, Kavousanaki M, Misirlaki H, Skoutas G, Virla D, Choustoulaki E, Kritikos I, Boumpas D, Sidiropoulos P. (2009) Anti-TNF treatment improves insulin resistance in rheumatoid arthritis patients: clinical and pathophysiological correlates. Clinical and Experimental Rheumatology 27:707-707 Kataya AR, Suliman MN, Kalantidis K, Livieratos IC. (2009) Cucurbit yellow stunting disorder virus p25 is a suppressor of post-transcriptional gene silencing. Virus Res. 145:48-53 Klasson L, Westberg J, Sapountzis P, Näslund K, Lutnaes Y, Darby AC, Veneti Z, Chen L, Braig HR, Garrett R, Bourtzis K, Andersson SG. (2009) The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans. Proc Natl Acad Sci U S A. 106:5725-30 Kofteridis D, Krasoudaki E, Kavousanaki M, Zervou MI, Panierakis C, Boumpas DT, Goulielmos GN. (2009) STAT4 is not associated with type 2 diabetes in the genetically homogeneous population of Crete. Genet Test Mol Biomarkers 13:281-4 Kourtis N. and Tavernarakis N. (2009) Cell-specific monitoring of protein synthesis in vivo. PLOS One 4:e4547 Kourtis N. and Tavernarakis N. (2009) Autophagy and cell death in model organisms. Cell Death and Differentiation 16:21-30 Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, Butler R, Campbell KS, Christophides GK, Christley S, Dialynas E, Hammond M, Hill CA, Konopinski N, Lobo NF, MacCallum RM, Madey G, Megy K, Meyer J, Redmond S, Severson DW, Stinson EO, Topalis P, Birney E, Gelbart WM, Kafatos FC, Louis C, Collins FH. (2009) VectorBase: a data resource for invertebrate vector genomics. Nucleic Acids Res. 37:D583-7 Lieberoth A, Splittstoesser F, Katagihallimath N, Jakovcevski I, Loers G, Ranscht B, Karagogeos D, Schachner M, Kleene R. (2009) Lewis(x) and alpha 2,3-Sialyl Glycans and Their Receptors TAG-1, Contactin, and L1 Mediate CD24-Dependent Neurite Outgrowth, Journal of Neuroscience 29:6677-90 Liljenfeldt L, Gkirtzimanaki K, Loskog A, Eliopoulos A. (2009) AdCD40L gene therapy enhances the efficacy of chemotherapy in experimental bladder cancer. Human Gene Therapy 20:1474-1474 Lionaki S, Siamopoulos K, Theodorou I, Papadimitraki E, Bertsias G, Boumpas D, Boletis J. (2009) Inhibition of tumour necrosis factor alpha in idiopathic membranous nephropathy: a pilot study. Nephrol Dial Transplant 24:2144-50 Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH. (2009) Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology. Proc Natl Acad Sci U S A.106:13892-6 Loskog AS, Eliopoulos AG. (2009) The Janus faces of CD40 in cancer. Semin Immunol. 21:301-7 Megalou E. and Tavernarakis N. (2009) Autophagy in Caenorhabditis elegans. Biochimica et Biophysica Acta-Molecular Cell Research 1793:1444-51 Melzak K.A., Gizeli E. (2009) Relative activity of cholesterol in OPPC/cholesterol/sphingomyelin mixtures measured with an acoustic sensor. Melzak K. Tsortos A. Gizeli E. (2009) Use of acoustic sensors to probe the mechanical properties of liposomes. Methods in Enzymology 465:21-41 Mitsakakis K., Tsortos A., Kondoh J., Gizeli E. (2009) Parametric study of SH-SAW device response to various types of surface perturbations. Sensors & Actuators B-Chemical 138:408-16 Mitsakakis K., Tserepi A., Gizeli E. (2009) SAW device integrated with microfluidics for array-type biosensing. Microelectronic Engineering 86:1416-18 Morselli E., Galluzzi L., Kepp O., Criollo A., Maiuri M. C., Tavernarakis N., Madeo F., and Kroemer G. (2009) Autophagy mediates pharmacological lifespan extension. Aging 1:961-970 Moschou PN, Sarris PF, Skandalis N, Andriopoulou AH, Paschalidis KA, Panopoulos NJ, Roubelakis-Angelakis KA. (2009) Engineered polyamine catabolism preinduces tolerance of tobacco to bacteria and oomycetes. Plant Physiol. 149:1970-81 Nakou M, Katsikas G, Sidiropoulos P, Bertsias G, Papadimitraki E, Raptopoulou A, Koutala H, Papadaki HA, Kritikos H, Boumpas DT. (2009) Rituximab therapy reduces activated B cells in both the peripheral blood and bone marrow of patients with rheumatoid arthritis: depletion of memory B cells correlates with clinical response. Arthritis Res Ther. 11:R131 Notas G, Xylouri I, Kritikos H, Stavroulaki E, Roditakis G, Boumpas D. (2009) A rare case of angioimmunoblastic T-cell lymphoma presenting with fever and late polyarthritis. Rheumatology 48:859-60 Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P. (2009) Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. Nucleic Acids Research 37:3276-87 Oulas A, Reczko M, Poirazi P. (2009) MicroRNAs and Cancer - The Search Begins! IEEE Transactions on Information Technology in Biomedicine 13:67-77 Panagiotakis SH, Perysinakis GS, Kritikos H, Vassilopoulos D, Vrentzos G, Linardakis M, Bertsias G, Glaser K, Daphnis E, Boumpas DT. (2009) The epidemiology of primary systemic vasculitides involving small vessels in Crete (southern Greece): a comparison of older versus younger adult patients. Clin Exp Rheumatol. 27:409-15 Papadakis G., Tsortos A., Gizeli E. (2009) Triple-helix DNA structural studies using a Love wave acoustic biosensor. Biosensors & Bioelectronics 25:702-7 Papadakis JA, Sidiropoulos PI, Karvounaris SA, Vrentzos GE, Spanakis EK, Ganotakis ES, Kritikos HD, Mikhailidis DP, Boumpas DT. (2009) High prevalence of metabolic syndrome and cardiovascular risk factors in men with ankylosing spondylitis on anti-TNFalpha treatment: correlation with disease activity. Clin Exp Rheumatol. 27:292-8 Papadimitraki ED, Tzardi M, Bertsias G, Sotsiou E, Boumpas DT. (2009) Glomerular expression of toll-like receptor-9 in lupus nephritis but not in normal kidneys: implications for the amplification of the inflammatory response. Lupus 18:831-5 Pavlopoulos A, Kontarakis Z, Liubicich D.M, Seranod J.M, Akam M, Patel N.H, Averof M. (2009) Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean. PNAS 106:13897-902 Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M. (2009) Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean. Proc Natl Acad Sci U S A.106:13897-902 Petrakis N, Alcock F, Tokatlidis K. (2009) Mitochondrial ATP-independent chaperones. IUBMB Life 61:909-14 Ponzi M, Sidén-Kiamos I, Bertuccini L, Currà C, Kroeze H, Camarda G, Pace T, Franke-Fayard B, Laurentino EC, Louis C, Waters AP, Janse CJ, Alano P. (2009) Egress of Plasmodium berghei gametes from their host erythrocyte is mediated by the MDV-1/PEG3 protein. Cell Microbiol. 11:1272-88 Pyrovolaki K, Mavroudi I, Sidiropoulos P, Eliopoulos AG, Boumpas DT, Papadaki HA. (2009) Increased expression of CD40 on bone marrow CD34+ hematopoietic progenitor cells in patients with systemic lupus erythematosus: contribution to Fas-mediated apoptosis. Arthritis Rheum. 60:543-52 Repa A, Petraki E, Choulaki C, Choustoulaki E , Misirlaki H, Kritikos H, Goulielmos G, Boumpas D, Sidiropoulos P. (2009) Familial Mediterranean fever patients have defective NALP3-inflammasome activation and IL-1b production. Clinical and Experimental Rheumatology 27:715-716 Repa A, Raptopoulou A, Kteniadaki H, Dali S, Boumpas D, Sidiropoulos P, Kritikos I. (2009) Patients with familial Mediterranean fever with a single MEFV mutation have similar clinical presentation and response to colchicine compared to patients with two mutation. Clinical and Experimental Rheumatology 27:714-715 Rieckher M., Kourtis N., Pasparaki A. and Tavernarakis N. (2009) Transgenesis in Caenorhabditis elegans. Methods in Molecular Biology 561:21-39 Roussakis E, Voutsadaki S, Pinakoulaki E, Sideris DP, Tokatlidis K, Katerinopoulos HE. (2009) ICPBCZin: A red emitting ratiometric fluorescent indicator with nanomolar affinity for Zn2+ ions (vol 44, pg 270, 2008). Cell Calcium 45:412-412 Sakurai K, Toyoshima M, Ueda H, Matsubara K, Takeda Y, Karagogeos D, Shimoda Y, Watanabe K. (2009) Contribution of the neural cell recognition molecule NB-3 to synapse formation between parallel fibers and Purkinje cells in mouse. Dev Neurobiol. 69:811-2 Sarris P, Abdelhalim M, Kitner M, Skandalis N, Panopoulos N, Doulis A, Lebeda A. (2009) Molecular polymorphisms between populations of Pseudoperonospora cubensis from Greece and the Czech Republic and the phytopathological and phylogenetic implications. Plant Pathology 58:933-43 Schulz H, Kolde R, Adler P, Aksoy I, Anastassiadis K, Bader M, Billon N, Boeuf H, Bourillot PY, Buchholz F, Dani C, Doss MX, Forrester L, Gitton M, Henrique D, Hescheler J, Himmelbauer H, Hübner N, Karantzali E, Kretsovali A, Lubitz S, Pradier L, Rai M, Reimand J, Rolletschek A, Sachinidis A, Savatier P, Stewart F, Storm MP, Trouillas M, Vilo J, Welham MJ, Winkler J, Wobus AM, Hatzopoulos AK; Functional Genomics in Embryonic Stem Cells Consortium. (2009) The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation. PLoS One 4:e6804 Schumacher B, Hoeijmakers JH, Garinis GA. (2009) Sealing the gap between nuclear DNA damage and longevity. Mol Cell Endocrinol. 299:112-7 Sideris DP, Petrakis N, Katrakili N, Mikropoulou D, Gallo A, Ciofi-Baffoni S, Banci L, Bertini I, Tokatlidis K. (2009) A novel intermembrane space-targeting signal docks cysteines onto Mia40 during mitochondrial oxidative folding. J Cell Biol. 187:1007-22 Sidiropoulos P, Flouri I, Drosos A, Boki K, Papadopoulos I, Skopouli F, Kanakoudi F, Karras D, Kritikos I, Geborek P, Boumpas D. 92009) Long-term follow-up of RA patients of the Hellenic Biologics Registry: comparison of first versus second anti-TNF-alpha therapy. Clinical and Experimental Rheumatology 27: 708-708 Sidiropoulos PI, Siakka P, Pagonidis K, Raptopoulou A, Kritikos H, Tsetis D, Boumpas DT. (2009) Sustained improvement of vascular endothelial function during anti-TNFalpha treatment in rheumatoid arthritis patients. Scand J Rheumatol. 38:6-10 Trantas E, Panopoulos N, Ververidis F. (2009) Metabolic engineering of the complete pathway leading to heterologous biosynthesis of various flavonoids and stilbenoids in Saccharomyces cerevisiae. Metab Eng. 11:355-66 Tsikala G, Karagogeos D, Strigini M. (2009) The role of Sphingolipids, Glycolipids and Phospholipids in the drosophila epithelial permeability barriers. Naunyn-Schmiedebergs archives of Pharmacology 380:370-71 Tsouti V, Boutopoulos C, Andreakou P, Ioannou M, Zergioti I, Goustouridis D, Kafetzopoulos D, Tsoukalas D, Normand P, Chatzandroulis S. (2009) Detection of the biotin–streptavidin interaction by exploiting van der Laan-Baalbergen NE, Mollema SA, Kritikos H, Schoe A, Huizinga TWJ, Bax JJ, Boumpas DT, van Laar JM. (2009) Heart failure as presenting manifestation of cardiac involvement in systemic lupus erythematosus. Netherlands Journal of Medicine 67:295-301 Vardouli L, Lindqvist C, Vlahou K, Loskog AS, Eliopoulos AG. (2009) Adenovirus delivery of human CD40 ligand gene confers direct therapeutic effects on carcinomas. Cancer Gene Ther. 16:848-60 Vasilaki E, Siderakis M, Papakosta P, Skourti-Stathaki K, Mavridou S, Kardassis D. (2009) Novel regulation of Smad3 oligomerization and DNA binding by its linker domain. Biochemistry 48:8366-78 Visser K, Katchamart W, Loza E, Martinez-Lopez JA, Salliot C, Trudeau J, Bombardier C, Carmona L, van der Heijde D, Bijlsma JW, Boumpas DT, Canhao H, Edwards CJ, Hamuryudan V, Kvien TK, Leeb BF, Martín-Mola EM, Mielants H, Müller-Ladner U, Murphy G, Østergaard M, Pereira IA, Ramos-Remus C, Valentini G, Zochling J, Dougados M. (2009) Multinational evidence-based recommendations for the use of methotrexate in rheumatic disorders with a focus on rheumatoid arthritis: integrating systematic literature research and expert opinion of a broad international panel of rheumatologists in the 3E Initiative. Ann Rheum Dis 68:1086-93 Zabalou S, Apostolaki A, Livadaras I, Franz G, Robinson AS, Savakis C, Bourtzis K. (2009) Incompatible insect technique: incompatible males from a Ceratitis capitata genetic sexing strain. Entomologia Experimentalis et Applicata 132:232-40 Zervakis M, Blazadonakis ME, Tsiliki G, Danilatou V, Tsiknakis M, Kafetzopoulos D. (2009) Outcome prediction based on microarray analysis: a critical perspective on methods. BMC Bioinformatics 10:53 Zhou Y, Won J, Karlsson MG, Zhou M, Rogerson T, Balaji J, Neve R, Poirazi P, Silva AJ. (2009) CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala. Nature Neuroscience 12:1438-43 |
