2011 (60 papers)

Banci L, Bertini I, Calderone V, Cefaro C, Ciofi-Baffoni S, Gallo A, Kallergi E, Lionaki E, Pozidis C, Tokatlidis K (2011) Molecular recognition and substrate mimicry drive the electron-transfer process between MIA40 and ALR. Proc Natl Acad Sci U S A. 108:4811-4816.
[Abstract]

Banci L, Bertini I, Ciofi-Baffoni S, Boscaro F, Chatzi A, Mikolajczyk M, Tokatlidis K, Winkelmann J. (2011) Anamorsin is a [2Fe-2S] cluster-containing substrate of the Mia40-dependent mitochondrial protein trapping machinery. Chem Biol. 18:794-804.
[Abstract]

Blazadonakis ME, Zervakis M, Kafetzopoulos D. (2011) Complementary gene signature integration in multiplatform microarray experiments. IEEE Trans Inf Technol Biomed. 15:155-163.
[Abstract]

Blazadonakis ME, Zervakis ME, Kafetzopoulos D. (2011) Integration of gene signatures using biological knowledge. Artif Intell Med. 53:57-71.
[Abstract]

Boleti, H., Smirlis, D., Dalagiorgou, G., Meurs, E.F., Christoforidis, S., and  Mavromara, P., (2010). ER targeting and retention of the HCV NS4B protein relies on the concerted action of multiple structural features including its transmembrane domains. Mol. Membr. Biol. 27:45-62.
[Abstract]

Chen L, Balabanidou V, Remeta D.P, Minetti C.A.S.A, Portaliou A.G, Economou A, Kalodimos C.G. (2011) Structural instability tuning as a regulatory mechanism in protein-protein interactions. Mol Cell. 44:734-744.
[Abstract]

Dalakouras A, Tzanopoulou M, Tsagris M, Wassenegger M, Kalantidis K. (2011) Hairpin transcription does not necessarily lead to efficient triggering of the RNAi pathway. Transgenic Res. 20:293-304.
[Abstract]

Deligianni E, Morgan RN, Bertuccini L, Kooij TW, Laforge A, Nahar C, Poulakakis N, Schüler H, Louis C, Matuschewski K, Siden-Kiamos I. (2011) Critical role for a stage-specific actin in male exflagellation of the malaria parasite. Cell Microbiol. 13:1714-1730.
[Abstract]

Eliopoulos E, Zervou MI, Andreou A, Dimopoulou K, Cosmidis N, Voloudakis G, Mysirlaki H, Vazgiourakis V, Sidiropoulos P, Niewold TB, Boumpas DT, Goulielmos GN. (2011) Association of the PTPN22 R620W polymorphism with increased risk for SLE in the genetically homogeneous population of Crete. Lupus. 20:501-506.
[Abstract]

Franek BS, Kariuki SN, Arrington J, Utset TO, Niewold TB, Mikolaitis RA, Jolly M, Zervou M, Boumpas DT, Goulielmos G. (2011) IRF8 Allele associated with susceptibility to multiple sclerosis is associated with serum interferon Alpha and serologic profile in systemic Lupus Erythematosus. J Investig Med. 59:705-705.
[Abstract]

Gessmann R, Kyvelidou C, Papadovasilaki M, Petratos K. (2011) The crystal structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis. Biopolymers. 95:202-207.
[Abstract]

Gomez-Gonzales JF, Mel BW, Poirazi P. (2011) Distinguishing linear vs. nonlinear integration in CA1 radial oblique dendrites: it's about time. Frontiers in Comp. Neurosc. 5:44.
[Abstract]

Gossec L, Paternotte S, Aanerud GJ, Balanescu A, Boumpas DT, Carmona L, de Wit M, Dijkmans BA, Dougados M, Englbrecht M, Gogus F, Heiberg T, Hernandez C, Kirwan JR, Mola EM, Cerinic MM, Otsa K, Schett G, Scholte-Voshaar M, Sokka T, von Krause G, Wells GA, Kvien TK. (2011) Finalisation and validation of the rheumatoid arthritis impact of disease score, a patient-derived composite measure of impact of rheumatoid arthritis: a EULAR initiative. Ann Rheum Dis. 70:935-942.
[Abstract]

Gregg SQ, Gutiérrez V, Robinson AR, Woodell T, Nakao A, Ross MA, Michalopoulos GK, Rigatti L, Rothermel CE, Kamileri I, Garinis G, Stolz DB, Niedernhofer LJ. (2011) A mouse model of accelerated liver aging due to a defect in DNA repair. Hepatology. 55:609-621.
[Abstract]

Helm JM, Dadami E, Kalantidis K. (2011) Local RNA silencing mediated by agroinfiltration. Methods Mol Biol. 744:97-108.
[Abstract]

Kapellios, E. A., Karamanou, S., Sardis, M. F., Aivaliotis, M., Economou, A, Pergantis, S. A. (2011) Using Nanoelectrospray Ion Mobility Spectrometry (GEMMA) to Determine the Size and Relative Molecular Mass of Proteins and Protein Assemblies: A Comparison with MALLS and QELS. Anal Bioanal Chem. 399:2421-2433.
[Abstract]

Karantzali E, Lekakis V, Ioannou M, Hadjimichael C, Papamatheakis J, Kretsovali A. (2011) Sall1 regulates embryonic stem cell differentiation in association with Nanog. J Biol Chem. 286:1037-1045.
[Abstract]

Knox PG, Davies CC, Ioannou M, Eliopoulos AG. (2011) The death domain kinase RIP1 links the immunoregulatory CD40 receptor to apoptotic signaling in carcinomas. J Cell Biol. 192:391-399.
[Abstract]

Kontarakis Z, Pavlopoulos A, Kiupakis A, Konstantinides N, Douris V, Averof M. (2011) A versatile strategy for gene trapping and trap conversion in emerging model organisms. Development. 138:2625-2630.
[Abstract]

Kontarakis Z, Konstantinides N, Pavlopoulos A, Averof M. (2011) Reconfiguring gene traps for new tasks using iTRAC. Fly. 5:352-355.
[Abstract]

Kourtis N, Tavernarakis N. (2011) Cellular stress response pathways and ageing: intricate molecular relationships. EMBO J. 30: 2520-2531.
[Abstract]

Krasagakis K, Fragiadaki I, Metaxari M, Kruger-Krasagakis S, Tzanakakis G.N, Stathopoulos E.N, Eberle J, Tavernarakis N, Tosca A.D. (2011) Kit receptor activation by autocrine and paracrine stem cell factor stimulates growth of merkel cell carcinoma in vitro. J Cell Physiol. 226:1099-1109.
[Abstract]

Krasagakis K., Metaxari M., Zervou M., Stathopoulos E. N., Eberle J., Kanitakis J., Georgoulias V., Krüger-Krasagakis S., Tavernarakis N. and Tosca A. D. (2011) Identification of the M541L sequence variation of the transmembrane Kit domain in Merkel cell carcinoma. Anticancer Res. 31:807-811.
[Abstract]

Markaki M, Tavernarakis N. (2011) The role of autophagy in genetic pathways influencing ageing. Biogerontology. 12:377-386.
[Abstract]

Mavroudi I, Papadaki V, Pyrovolaki K, Katonis P, Eliopoulos AG, Papadaki HA. (2011) The CD40/CD40 ligand interactions exert pleiotropic effects on bone marrow granulopoiesis. J Leukoc Biol. 89:771-783.
[Abstract]

Menzel U, Kosteas T, Tolaini M, Killeen N, Roderick K, Kioussis D. (2011) Modulation of the murine CD8 gene complex following the targeted integration of human CD2-locus control region sequences. J Immunol. 187:3712-3720.
[Abstract]

Mitsakakis K, Gizeli E. (2011) Multi-sample acoustic biosensing microsystem for protein interaction analysis. Biosens Bioelectron. 26:4579-4584.
[Abstract]

Mitsakakis K, Gizeli E. (2011) Detection of multiple cardiac markers with an integrated acoustic platform for cardiovascular risk assessment. Anal Chim Acta. 699:1-5.
[Abstract]

Morselli E, Marino G, Bennetzen M, Eisenberg T, Megalou E, Schroeder S, Cabrera S, Benit P, Rustin P, Criollo A, Shen S, Kepp O, Maiuri C, Horio Y, Lopez-Otin C, Andersen J. S, Tavernarakis N, Madeo F, Kroemer G. (2011) Spermidine and resveratrol induce autophagy by distinct pathways converging on the acetylproteome. J Cell Biol. 192:615-629.
[Abstract]

Mosialou I, Krasagakis L, Kardassis D. (2011) Opposite regulation of the human apolipoprotein M gene by hepatocyte nuclear factor 1 and Jun transcription factors. J Biol Chem. 286:17259-17269.
[Abstract]

Ohnsorg PM, Rohrer L, Perisa D, Kateifides A, Chroni A, Kardassis D, Zannis VI, von Eckardstein A. (2011) Carboxyl Terminus of Apolipoprotein A-I (ApoA-I) Is Necessary for the Transport of Lipid-free ApoA-I but Not Prelipidated ApoA-I Particles through Aortic Endothelial Cells. J Biol Chem. 286:7744-7754.
[Abstract]

Oulas A, Poirazi P. (2011) Utilization of SSCprofiler to predict a new miRNA gene. Methods Mol Biol. 676:243-252.
[Abstract]

Oulas A, Karathanasis N, Poirazi P. (2011) Computational Identification of miRNAs Involved in Cancer. Methods Mol Biol. 676:23-41.
[Abstract]

Oulas A, Karathanasis N, Louloupi A, Poirazi P. (2011) Finding cancer-associated miRNAs: methods and tools. Mol Biotechnol. 49:97-107.
[Abstract]

Papanikolaou A, Papafotika Α, Christoforidis S. (2011) CD39 reveals novel insights into the role of transmembrane domains in protein processing, apical targeting and activity. Traffic. 12(9):1148-1165.
[Abstract]

Rieckher M., Meyer H., Ripoll J. and Tavernarakis N. (2011) Microscopic optical projection tomography in vivo. PLoS One. 6:e18963.
[Abstract]

Saitakis M, Gizeli E. (2011) Acoustic sensors as a biophysical tool for probing cell attachment and cell/surface interactions. Cell Mol Life Sci. 69:357-371.
[Abstract]

Saitakis M, Gizeli E. (2011) Quantification of the effect of glycocalyx condition on membrane receptor interactions using an acoustic wave sensor. Eur Biophys J. 40:209-215.
[Abstract]

Saridaki A, Sapountzis P, Harris HL, Batista PD, Biliske JA, Pavlikaki H, Oehler S, Savakis C, Braig HR, Bourtzis K. (2011) Wolbachia prophage DNA adenine methyltransferase genes in different Drosophila-Wolbachia associations. PLoS One 6:e19708.
[Abstract]

Sarris PF, Gao S, Karademiris K, Jin H, Kalantidis K, Panopoulos NJ. (2011) Phytobacterial type III effectors HopX1, HopAB1 and HopF2 enhance sense-post-transcriptional gene silencing independently of plant R gene-effector recognition. Mol Plant Microbe Interact. 24:907-917.
[Abstract]

Segers K, Klaassen H, Economou A, Chaltin P, Anné J. (2011) Development of a high-throughput screening assay for the discovery of small-molecule SecA inhibitors. Anal Biochem. 413:90-96.
[Abstract]

Siden-Kiamos I, Ganter M, Kunze A, Hliscs M, Steinbüchel M, Mendoza J, Sinden RE, Louis C, Matuschewski K. (2011) Stage-specific Depletion of Myosin A Supports an Essential Role in Motility of Malarial Ookinetes. Cell Microbiol. 13:1996-2006.
[Abstract]

Stagakis E, Bertsias G, Verginis P, Nakou M, Hatziapostolou M, Kritikos H, Iliopoulos D, Boumpas DT. (2011) Identification of novel microRNA signatures linked to human lupus disease activity and pathogenesis: miR-21 regulates aberrant T cell responses through regulation of PDCD4 expression. Ann Rheum Dis. 70:1496-1506.
[Abstract]

Strohoffer, C, Förster T, Chorvat D, Kasak P, Lacik I, Koukaki M, Karamanou S, Economou A. (2011) Quantitative analysis of energy transfer between fluorescent proteins in a CFP-GBP-YFP construct and its response to Ca 2+. Phys Chem Chem Phys. 13:17852-17863.
[Abstract]

Topalis P, Dialynas E, Mitraka E, Deliyanni E, Siden-Kiamos I, Louis C. (2011) A set of ontologies to drive tools for the control of vector-borne diseases. J Biomed. Inform. 44:42-47.
[Abstract]

Troulinaki K, Tavernarakis N. (2011) Endocytosis and intracellular trafficking contribute to necrotic neurodegeneration in C. elegans. EMBO J. 31:654-666.
[Abstract]

Trusca GV, Fuior EV, Florea IC, Kardassis D, Simionescu M, Gafencu AV. (2011) Macrophage-specific upregulation of apolipoprotein E gene expression by STAT1 is achieved via long-range genomic interactions. J Biol Chem. 286:13891-13904.
[Abstract]

Tserevelakis GJ, Filippidis G, Megalou E, Fotakis C, Tavernarakis N. (2011) Cell tracking studies in live Caenorhabditis elegans embryos via Third Harmonic Generation imaging microscopy measurements. J Biomed Opt. 16:046019.
[Abstract]

Tsiliki G, Zervakis M, Ioannou M, Sanidas E, Stathopoulos E, Potamias G, Tsiknakis M, Kafetzopoulos D. (2011) Multi-platform data integration in microarray analysis. IEEE Trans Inf Technol Biomed. 15:806-812.
[Abstract]

Tsortos A, Papadakis G, Gizeli E. (2011) The intrinsic viscosity of linear DNA. Biopolymers. 95:824-832.
[Abstract]

Tzamali E, Poirazi P, Tollis IG, Reczko M. (2011) A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities. BMC Syst Biol. 5:167.
[Abstract]

Vidaki M, Tivodar S, Doulgeraki K, Tybulewicz V, Kessaris N, Pachnis V, Karagogeos D. (2011) Rac1-Dependent Cell Cycle Exit of MGE Precursors and GABAergic Interneuron Migration to the Cortex. Cereb Cortex. 22:680-692.
[Abstract]

Vougioukalaki M, Kanellis DC, Gkouskou K, Eliopoulos AG. (2011) Tpl2 kinase signal transduction in inflammation and cancer. Cancer Lett. 304:80-89.
[Abstract]

Wang W, Karagogeos D, Kilpatrick DL. (2011) The effects of Tag-1 on the maturation of mouse cerebellar granule neurons. Cell Mol Neurobiol. 31:351-356.
[Abstract]

Zoupi L, Savvaki M, Karagogeos D. (2011) Axons and myelinating glia: An intimate contact. IUBMB Life. 63:730-735.
[Abstract]