2025

Sarafoglou, C., Kofidis, A., de Boer, M., Mylonakis, M., Mavrakis, K., Zacharakis, G., Pantazis, Y., and Gouridis, G. (2025). NEXT-FRET: A solution-based smFRET platform to resolve folding intermediates under native conditions doi: 10.1101/2025.07.30.666321 [bioRxiv]

Muthahari, Y., Aditama, R., Providaki, M., Tsirigotaki, A., Sarafoglou, C., Xu, R., Krishnamurthy, S., Hertadi, R., Kokkinidis M., Laurino, P., Pozidis, C., and Gouridis, G. (2025). Allosteric evolution under resource constraints: Thermodynamic trade-offs between affinity and efficiency. doi: 10.1101/2025.10.08.680613 [bioRxiv]

Divanach P, Noti A, Vouvopoulos P, Athanasiou T, Kountourakis N, Harmandaris V, Rissanou AN, Mitraki A. FmocFF Peptide Hydrogel Is a Promising Matrix for Encapsulation and Controlled Release of the Anticancer Peptide Drug Bortezomib Biomolecules. 2025 Jun 8;15(6):839. doi: 10.3390/biom15060839.
[Abstract]

Tsakiri D, Kotsaridis K, Michalopoulou VA, Zhang N, Marinos S, Kountourakis N, Kokkinidis M, Martin GB, Sarris PF. Subcellular targets and recognition mechanism of Ralstonia solanacearum effector RipE1. iScience. 2025 Mar 28;28(5):112307. doi: 10.1016/j.isci.2025.112307. eCollection 2025 May 16.
[Abstract]

2024

Klytaimnistra Katsara, Zacharias Viskadourakis, Eleftherios Alissandrakis, Nikos Kountourakis, George Kenanakis ,and Vassilis M. Papadakis. Microplastics’ Detection in Honey: Development of Protocols in a Simulation. Appl. Sci. 2024, 14(11), 4720; https://doi.org/10.3390/app14114720
[Abstract]

2023

Zelenka T, Papamatheakis DA, Tzerpos P, Panagopoulos G, Tsolis KC, Papadakis VM, Mariatos Metaxas D, Papadogkonas G, Mores E, Kapsetaki M, Papamatheakis J, Stanek D, Spilianakis C. A novel SATB1 protein isoform with different biophysical properties Front Cell Dev Biol. 2023 Aug 11;11:1242481. doi: 10.3389/fcell.2023.1242481. eCollection 2023
[Abstract]

Kotsaridis K, Michalopoulou VA, Tsakiri D, Kotsifaki D, Kefala A, Kountourakis N, Celie PHN, Kokkinidis M, Sarris PF. The functional and structural characterization of Xanthomonas campestris pv. campestris core effector XopP revealed a new kinase activity Plant J. 2023 Oct;116(1):100-111. doi: 10.1111/tpj.16362. Epub 2023 Jul 4.
[Abstract]

2022

Gouridis G, Muthahari YA, de Boer M, Griffith DA, Tsirigotaki A, Tassis K, Zijlstra N, Xu R, Eleftheriadis N, Sugijo Y, Zacharias M, Dömling A, Karamanou S, Pozidis C, Economou A, Cordes T.. Structural dynamics in the evolution of a bilobed protein scaffold. Proc Natl Acad Sci U S A. 2021 Dec 7;118(49):e2026165118. doi: 10.1073/pnas.2026165118.
[Abstract]

2021

Destouni A, Tsolis KC, Economou A, Papathanasiou I, Balis C, Mourmoura E, Tsezou A. Chondrocyte protein co-synthesis network analysis links ECM mechanosensing to metabolic adaptation in osteoarthritis. Expert Rev Proteomics. 2021 Jul;18(7):623-635. doi: 10.1080/14789450.2021.1962299. Epub 2021 Aug 11.
[Abstract]

Li X, Tsolis KC, Koper MJ, Ronisz A, Ospitalieri S, von Arnim CAF, Vandenberghe R, Tousseyn T, Scheuerle A, Economou A, Carpentier S, Otto M, Thal DR. Sequence of proteome profiles in preclinical and symptomatic Alzheimer's disease. Alzheimers Dement. 2021 Jun;17(6):946-958. doi: 10.1002/alz.12345. Epub 2021 Apr 19.
[Abstract]

2020

Theodosiou T, Papanikolaou N, Savvaki M, Bonetto G, Maxouri S, Fakoureli E, Eliopoulos AG, Tavernarakis N, Amoutzias GD, Pavlopoulos GA, Aivaliotis M, Nikoletopoulou V, Tzamarias D, Karagogeos D, Iliopoulos I. UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network. NAR Genom Bioinform. 2020 Feb 11;2(1):lqaa005. doi: 10.1093/nargab/lqaa005. eCollection 2020 Mar.
[Abstract]

Goulielmaki E, Ioannidou A, Tsekrekou M, Stratigi K, Poutakidou IK, Gkirtzimanaki K, Aivaliotis M, Evangelou K, Topalis P, Altmüller J, Gorgoulis VG, Chatzinikolaou G, Garinis GA. Tissue-infiltrating macrophages mediate an exosome-based metabolic reprogramming upon DNA damage. Nat Commun. 2020 Jan 2;11(1):42. doi: 10.1038/s41467-019-13894-9.
[Abstract]

2019

Balabanidou V, Kefi M, Aivaliotis M, Koidou V, Girotti JR, Mijailovsky SJ, Juárez MP, Papadogiorgaki E, Chalepakis G, Kampouraki A, Nikolaou C, Ranson H, Vontas J. Mosquitoes cloak their legs to resist insecticides Proc Biol Sci. 2019 Jul 24;286(1907):20191091. doi: 10.1098/rspb.2019.1091. Epub 2019 Jul 17.
[Abstract]

Chalkiadaki K, Velli A, Kyriazidis E, Stavroulaki V, Vouvoutsis V, Chatzaki E, Aivaliotis M, Sidiropoulou K. Development of the MAM model of schizophrenia in mice: Sex similarities and differences of hippocampal and prefrontal cortical function. Neuropharmacology . 2019 Jan:144:193-207. doi: 10.1016/j.neuropharm.2018.10.026. Epub 2018 Oct 24
[Abstract]

2018

Charova SN, Gazi AD, Mylonas E, Pozidis C, Sabarit B, Anagnostou D, Psatha K, Aivaliotis M, Beuzon CR, Panopoulos NJ, Kokkinidis M. Migration of Type III Secretion System Transcriptional Regulators Links Gene Expression to Secretion mBio . 2018 Jul 31;9(4):e01096-18. doi: 10.1128/mBio.01096-18.
[Abstract]